Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331C05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.3  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   3.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   5.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.7  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 52  LRRSTTYRTSVTCRLSTVAL 111
           LR S    TS  C+L+ VAL
Sbjct: 262 LRSSENQNTSAECKLAKVAL 281


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 52  LRRSTTYRTSVTCRLSTVAL 111
           LR S    TS  C+L+ VAL
Sbjct: 12  LRSSENQNTSAECKLAKVAL 31


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 15/68 (22%), Positives = 28/68 (41%)
 Frame = -3

Query: 285 STEFVVSLAHFQDSLLDFLNRKLRLHACRVPM*LWYPILKGLTFVYFDSGFNCAELLLQR 106
           STE+        D LL    +K R H   +       +LK    ++  +  +  E + + 
Sbjct: 112 STEYRFFKPWLGDGLLISTGQKWRNHRKLIAPTFHLNVLKSFIDLFNANARSVVEKMRKE 171

Query: 105 NGRKTTCY 82
           NG++  C+
Sbjct: 172 NGKEFDCH 179


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 409 RLVRPKDIVQYIADKEDIY 465
           RL+R   +V+Y++  E++Y
Sbjct: 218 RLLRLSRLVRYVSQWEEVY 236


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 409 RLVRPKDIVQYIADKEDIY 465
           RL+R   +V+Y++  E++Y
Sbjct: 218 RLLRLSRLVRYVSQWEEVY 236


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 409 RLVRPKDIVQYIADKEDIY 465
           RL+R   +V+Y++  E++Y
Sbjct: 218 RLLRLSRLVRYVSQWEEVY 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,936
Number of Sequences: 438
Number of extensions: 2737
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)