Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331C04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 1.7
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 27 2.2
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 2.2
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 3.0
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 3.0
SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces pom... 26 3.0
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 26 3.9
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac... 25 5.2
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 9.0
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 25 9.0
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 1.7
Identities = 21/69 (30%), Positives = 30/69 (43%)
Frame = +1
Query: 262 NRIISMLHEAKEDAGIPKDQALDSLGLTLSGCEQESSNAELVARVKDLDPMCAKAVYAAS 441
N ++S+LH KED+G+P D L S ++ + LV +L P A
Sbjct: 275 NDVVSVLHN-KEDSGLPCDLLLLSGSCVVNEAMLSGESTPLVKESIELRPEEAVIDVDEL 333
Query: 442 DTAGSLFTG 468
D LF G
Sbjct: 334 DKNAVLFGG 342
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 281 SMLMILLAHPSIPRVQWFVPRPLALPTTRPASSHITRFE*VAPPSTPP 138
S L L + PS+ R W + L LP+TR S T F+ PP
Sbjct: 3 SKLFCLRSFPSVQRTAW---QRLVLPSTRKFSLTPTTFDKTPSGRIPP 47
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 240 SPMVRAETFSSPNDTSSFVAYHKVRVSCSSLYSTEK 133
S + A S PN T F+AYHK + T+K
Sbjct: 1262 SVLFHAGKSSDPNLTVDFLAYHKAAADTFEVAKTQK 1297
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 291 GLVQHAYDPIGASVYSKSPMVRAETFSSPNDTSSFVAYHKV 169
GLV+ YDPIG V+ +R +S + S V V
Sbjct: 466 GLVERFYDPIGGQVFLDGKDLRTLNVASLRNQISLVQQEPV 506
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -3
Query: 309 DPCVFFGLVQHAYDPIGASVYSKSPMVRAETFSSPN 202
+P +FG V H P G S S S + F N
Sbjct: 56 NPASYFGTVSHPVTPAGVSTDSLSSPIETNKFFDNN 91
>SPBC14C8.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 144
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 317 SLGIPASSLASCSMLMILLAHPSIPRVQWFVPR--PLALPTTR 195
SL +P SL CS + L+ + +FVP P LP R
Sbjct: 16 SLAVPKQSLQECSYMSNLITDRESTFLSYFVPSKDPKMLPVYR 58
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 424 AVYAASDTAGSLFTGAPDGGMVLIAGTGSNA 516
++YA+ DT+ S FT D L+ SNA
Sbjct: 23 SMYASRDTSTSSFTNPTDSSTRLLYNNASNA 53
>SPBC1734.09 |||NST UDP-N-acetylglucosamine
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -1
Query: 263 LAHPSIPRVQWFV 225
L HP +PR +WFV
Sbjct: 58 LKHPKVPRKRWFV 70
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = +1
Query: 271 ISMLHEAKEDAGIPKDQALDSLGLTLSGCEQESSNAELVARVKDLDPMCAKAVYAASDTA 450
I++ ++K + K++ + LS C +++ A RV + Y+A D++
Sbjct: 64 INLADQSKAEEFAFKNKLSKESAIQLSSCIRKTLLAPSSTRVPSKNSSYETLTYSAKDSS 123
Query: 451 GSLFTGAPDG 480
+FT G
Sbjct: 124 DDVFTETNSG 133
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -1
Query: 287 SCSMLMILLAHPSIPRVQWFV-PRPLALPTTRPASSHITRF 168
SC L + H S R+QW P LP+ ++T F
Sbjct: 120 SCLCLFYIKGHASSIRLQWIASPNAYELPSLNERFVYMTYF 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,412
Number of Sequences: 5004
Number of extensions: 37986
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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