Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331C04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0174 + 2504058-2504253,2504929-2505076,2505265-2505456,250... 32 0.24
12_02_1268 + 27458823-27460046 31 0.42
03_02_0019 - 5031667-5032614 29 2.3
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 29 3.0
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 29 3.0
12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621 28 4.0
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 28 4.0
05_04_0076 - 17697893-17697922,17698312-17698707 28 4.0
04_03_1025 + 21803807-21805249 28 5.2
03_01_0603 + 4445977-4446882 27 6.9
11_06_0702 + 26432798-26432890,26434021-26434416 27 9.1
07_03_1256 - 25237465-25237590,25237833-25237918,25238025-252380... 27 9.1
03_02_0171 + 6126685-6127107,6127237-6127581,6127701-6127997,612... 27 9.1
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790... 27 9.1
01_01_0822 - 6401993-6402133,6402542-6402708,6402865-6402966,640... 27 9.1
>09_01_0174 +
2504058-2504253,2504929-2505076,2505265-2505456,
2505878-2506006,2506368-2506537,2506946-2507076,
2507391-2507468
Length = 347
Score = 32.3 bits (70), Expect = 0.24
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 322 ALDSLGLTLSGCEQESSNAELVARVKDLDPMCAKAVYAASDTAGSLFTGAPDG--GMVLI 495
A+ ++ L +SG S ++ ++DL P K Y +D +L +G G VLI
Sbjct: 90 AVRAVCLAVSGVNHPSDQQRMLDWIRDLFPGHVK-FYVENDAVAALASGTMGKLHGCVLI 148
Query: 496 AGTGSNA 516
AGTGS A
Sbjct: 149 AGTGSIA 155
>12_02_1268 + 27458823-27460046
Length = 407
Score = 31.5 bits (68), Expect = 0.42
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 211 AKGLGTNHWTLGIDGCANRIISMLHEAKED--AGIPKDQALDSLGLTLSGCEQESSNAEL 384
A+ L T +D C R++ LHEAKE AG D S S +S +
Sbjct: 330 AENLMPRSKTKDVDACLERLVKALHEAKETKAAGGNDDDDESSSSSDDSDSSSDSEEQDK 389
Query: 385 VARVKDLDPMCAKAVY 432
+A V LD A+ Y
Sbjct: 390 LAVVTKLDFSLAQPNY 405
>03_02_0019 - 5031667-5032614
Length = 315
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 307 IPKDQALDSLGLTLSGCEQ--ESSNAELVARVKDLDPMCAKAVY 432
+P+DQ D L L+ + ++ A+LVA +D DP CAK V+
Sbjct: 104 LPQDQLRDLLAGALAAHPEAGRAARADLVA-ARDRDPACAKMVH 146
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = -3
Query: 303 CVFFGLVQHAYDPIGASVYSKSPMVRAETFSSPNDTSSFVAYHKVRVSCSSLYSTEKHC 127
C + ++++++ + +++ P+ F S ND S H + V C L E+HC
Sbjct: 172 CCYSIVLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKC--LREMEEHC 228
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 199 VVGRAKGLGTNHWTLGID-GCANRIISMLHEAKEDAGIPKDQALDSLGLTLS 351
+VG + G H D GC R + E+ EDAG KD++ G LS
Sbjct: 1696 IVGSEENSGEGHCVCSSDNGCVPRECTCHLESNEDAGTIKDESYYLSGQPLS 1747
>12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621
Length = 230
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 256 CANRIISMLHEAKEDAGIPKDQALDSLGLTLS 351
C+N I+ L E K+D G P +L LG ++S
Sbjct: 75 CSNVILDKLPEKKKDPGCPTITSLCDLGASIS 106
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +1
Query: 274 SMLHEAKEDAGIPKDQALDSLGLTLSGCEQESSNAELVARVKDLDPM 414
S + E K++ G K+ D L L L + + SN+EL+ VKDLD M
Sbjct: 421 SQIEELKQELGHEKNLNGD-LHLQLQ--KMQESNSELLLAVKDLDEM 464
>05_04_0076 - 17697893-17697922,17698312-17698707
Length = 141
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 435 GVRHSRVPVHWSTGRRHGSYCWYR 506
G RH V VH G HG++CWYR
Sbjct: 10 GRRHHFVLVH---GLCHGAWCWYR 30
>04_03_1025 + 21803807-21805249
Length = 480
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -1
Query: 284 CSMLMILLAHPSIPRVQWFV-----PRPLALPTTRPASSH 180
CS L+ L A PS P F+ PRP A TT+P+S++
Sbjct: 114 CSHLLSLPAFPSHPITSRFLASLAPPRPGAAATTKPSSAN 153
>03_01_0603 + 4445977-4446882
Length = 301
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 307 IPKDQALDSLGLTLSGCEQESSNAEL-VARVKDLDPMCAKAVY 432
+P+DQ D L L+ + A +A +D DP CAK V+
Sbjct: 98 LPQDQLRDLLAGALAAHPEAGRAARADLAAARDRDPACAKMVH 140
>11_06_0702 + 26432798-26432890,26434021-26434416
Length = 162
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 289 AKEDAGIPKDQALDSLGLTLSGCEQESSNAELVARVKDL 405
A EDAG+P D DS G L G E++S + + +L
Sbjct: 123 AGEDAGVPGDWGHDSRG-KLGGIEEDSMGIKTPESILEL 160
>07_03_1256 -
25237465-25237590,25237833-25237918,25238025-25238083,
25238516-25238612,25239582-25239663,25239752-25240096
Length = 264
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +1
Query: 322 ALDSLGLTLSGCEQESSNAELVARVKDL--DPMCAKAVYAASDTAGSLFTGAPDGGMVLI 495
A+ G+T G + S L R +D DP ++A +D G L TG P G I
Sbjct: 90 AVKLAGITSVGVRGDDSVYVLTHRKEDKLHDPTTITNLFAITDRIGLLATGMPGDGRA-I 148
Query: 496 AGTGSNA 516
A NA
Sbjct: 149 AQEARNA 155
>03_02_0171 +
6126685-6127107,6127237-6127581,6127701-6127997,
6129763-6129990,6130716-6131036
Length = 537
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 381 ISGQGQRFRSDVCKSGVCGVRHSRVP 458
++G +D C+S CG RHSR P
Sbjct: 285 VAGGDNNNAADDCQSRKCGSRHSRKP 310
>02_02_0211 +
7898434-7898574,7898759-7899349,7899575-7899821,
7900020-7900118,7900158-7900321,7900371-7900870,
7901007-7901256,7901461-7901549,7901823-7902064,
7902175-7902479,7902798-7902906,7903150-7903313
Length = 966
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Frame = +1
Query: 256 CANRIISMLHEAKEDAGIPK----------DQALDSLGLTLSGCEQESSNAELVARVKDL 405
C++ I+ L E K+D G P DQAL LG +S ++ SN +L V L
Sbjct: 444 CSDLILHKLAEKKKDPGCPTITCSIGAQQFDQALCDLGANVSIMPKDVSN-KLNFTVLSL 502
Query: 406 DPMC 417
P+C
Sbjct: 503 TPIC 506
>01_01_0822 -
6401993-6402133,6402542-6402708,6402865-6402966,
6403437-6403577,6403685-6403768,6403858-6404164,
6404286-6404357
Length = 337
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 307 IPKDQALDSLGLTLSGCEQESSNAELVARVKDLDPMCAKAVYAASDTAGSLFTGAPDGGM 486
I KD D++ ++G S E VA K+L V A AGS+ AP+
Sbjct: 64 ILKDSFYDNV---ITGSSATSVRMEFVASNKELSSPSTSTVTAEDSFAGSVVADAPETES 120
Query: 487 VLIAGTGSNA 516
+L S++
Sbjct: 121 ILTKSPESDS 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,237
Number of Sequences: 37544
Number of extensions: 291779
Number of successful extensions: 987
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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