Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331C04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical pr...    56   1e-08
Z81505-2|CAB04121.2|  505|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81568-10|CAB04600.1|  441|Caenorhabditis elegans Hypothetical p...    27   6.2  

>U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical
           protein W06B4.2 protein.
          Length = 521

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
 Frame = +1

Query: 136 FGGVEGGATHSNLVICDEAGRVVGRAKGLGTNHWTLGIDGCANRIISMLHEAKEDAGIPK 315
           + G+EGGAT S LVI D        +   GTN +         RI   + E  E   +  
Sbjct: 196 YAGIEGGATGSKLVIIDADTNQRYTSSTEGTNFFLTDHTIVCKRIADWILEVFEKEKL-D 254

Query: 316 DQALDSLGLTLSGCEQESSNAELVARVKDLDPMCAKAVYAASDTAGSLFTGAP--DGGMV 489
            + L +LGL LSG E E  N + V   +       +  Y  SD   +L    P  + G+V
Sbjct: 255 IKNLKALGLGLSGAEDEEFNKKFVDYFRQNHGNVTENFYLTSDAVMTLLANFPGEENGIV 314

Query: 490 LIAGTGSN 513
           LIAGTGS+
Sbjct: 315 LIAGTGSS 322


>Z81505-2|CAB04121.2|  505|Caenorhabditis elegans Hypothetical
           protein F16A11.2 protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 142 GVEGGATHSNLVICDEAGRVVGRAKGLGTNHWTLGIDGCANRIISM 279
           G E G   +    C  AGR + RAK   T  W   ID    + IS+
Sbjct: 414 GTEQGLVETFGTTCHGAGRALSRAKSRRTITWDSVIDDLKKKEISI 459


>Z81568-10|CAB04600.1|  441|Caenorhabditis elegans Hypothetical
           protein K08E3.8 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = -1

Query: 260 AHPSIPRV---QWFVPRPLALPTTRPASSHITRFE*VAPPSTPPKNI 129
           A+P+ P++   Q  + +P++LP T     H++R   VAPPS+ P N+
Sbjct: 107 ANPTTPQMMQQQMGMNQPMSLPPT-----HVSRPGSVAPPSSVPVNL 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,491,412
Number of Sequences: 27780
Number of extensions: 228080
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)