Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331C03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    29   0.42 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   1.3  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.2  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   3.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   3.9  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   5.2  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   6.8  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   9.0  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    25   9.0  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   9.0  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   9.0  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 99  LRESHQYYRAVVRMHLVLL 155
           L+ESHQ YR +V +HL LL
Sbjct: 297 LKESHQIYRKMVSLHLELL 315


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
 Frame = +3

Query: 237 SIENGVQAKSDGSHKYLSITQGPLPSYAH-----TPGTTIELTCEAAGSPAPSVHWFKND 401
           S +N    K+D S +    T     +Y++     T  T  + T E   S +       N 
Sbjct: 244 STQNPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNT 303

Query: 402 SPVYEYDVESNELIDSSPTSIARISSTLIVTRTTS 506
           SP     + S+  I  SP+     SST  +T  ++
Sbjct: 304 SPQISSTISSSSFIVESPSVALSTSSTTTITNAST 338


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 327 PGTTIELTCEAAGSPAPSVHWFKNDSP 407
           PG T + TC   GS   +V++ KN  P
Sbjct: 427 PGCTYDNTCSQRGSVIANVYFAKNKQP 453


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 186 QSAHLNKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQ 299
           Q AH+N+    +SD+DNS    V+   +G+   +S+ +
Sbjct: 47  QCAHMNRRPAWISDLDNSSLEVVRHLGEGNGGAVSLVK 84


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/76 (21%), Positives = 32/76 (42%)
 Frame = +3

Query: 279 KYLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPT 458
           K+L +    +    +TPG T ++      +P PS +           +  ++ +  ++ T
Sbjct: 8   KFLLLVTAVMAQTEYTPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNIT 67

Query: 459 SIARISSTLIVTRTTS 506
           SI    ST   + TT+
Sbjct: 68  SIVPPPSTSHNSTTTT 83


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 240 IENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTIELT 350
           +EN ++ K+    K ++ITQ P   Y   P +T+ELT
Sbjct: 268 LENCLECKTA---KVVNITQKPKTKYKPLPLSTVELT 301


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +3

Query: 171 LLGSCQSAHLNKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTIE 344
           +L  CQ      H   L+DI  SI    +   DG   Y+S   G +  +    G  IE
Sbjct: 549 MLTYCQDGISLTHSLKLTDIPRSIVYSQKYGDDGGTLYVSTNNGYVLMFNFQNGQVIE 606


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 201 NKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTI 341
           NK+  L S +D      + AK+D     + + +GPLP Y    G+T+
Sbjct: 3   NKYYPLRSSMDE-----LSAKNDNE---IDLEKGPLPEYNSEDGSTL 41


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 201 NKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTI 341
           NK+  L S +D      + AK+D     + + +GPLP Y    G+T+
Sbjct: 3   NKYYPLRSSMDE-----LSAKNDNE---IDLEKGPLPEYNSEDGSTL 41


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 204 KHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPSYAH 323
           KHI LL +I N +   V  +       L +    LPSY H
Sbjct: 203 KHIPLLENIRNKVLTEVPKQFSVDKNQLKMFVHYLPSYYH 242


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = +3

Query: 141 HLVLLFTVAALLGSCQSAHLNKHIKLLSDIDNSIE------NGVQAKSDGSHKYL 287
           H+V L+  AA      S H    I+++S  DN  E      NG Q +  G++  L
Sbjct: 411 HVVALYDYAAQAAGDLSFHAGDRIEVVSRTDNQNEWWIGRLNGAQGQFPGNYVQL 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,575
Number of Sequences: 5004
Number of extensions: 36760
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)