Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331B12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 64 1e-11
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 28 0.73
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 1.7
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 27 1.7
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 26 3.9
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 25 6.8
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.8
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 6.8
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 6.8
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 25 6.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 6.8
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 9.0
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 9.0
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 64.1 bits (149), Expect = 1e-11
Identities = 38/142 (26%), Positives = 67/142 (47%)
Frame = +2
Query: 95 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 274
LSD VQ ++ M++FI+Q F +EK ++V++Q I
Sbjct: 3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62
Query: 275 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 454
I SN+LN++RL++L ++ + ++ K+L + + Y++ + LIVQ
Sbjct: 63 RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122
Query: 455 ALFQLMEPTVTIRVRQTDKALV 520
A+ L EP + RQ D +V
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIV 144
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 0.73
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 4 TSFPEPVINFLALYRPFFVLVVLKISSSHGAQRCRCSE-TDQAHD 135
T+ P+ V NFL+L RP+ VL + +S + +E T++A D
Sbjct: 233 TATPDRVDNFLSLLRPYGVLEACRTGTSAMTRAPHSNEVTEEAED 277
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 353 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 478
D N L+EA+KRLA +P D E+ +T + F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 484 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFVEYITYMIFTHFQYLQTSLVQHV 308
+S F +EESL K + F + + S ++ +E I Y I THF S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 401 LQPGAC-ELRRVHYVHDLHALSVPSDELGSACSKIGSSSEV 282
L+PG C LR + +HA+ V ++ C GSS+ +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARI 202
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/65 (18%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -2
Query: 499 TDADSDSGFHELEESLHNKCDQQL*VQFGVLWH-FSQALASFVEYITYMIFTHFQYLQTS 323
T+ D + G+ +L+E + + + +FG+ W+ + +F++ + Q L++
Sbjct: 13 TEEDDEEGYEKLKEEMGSALNNLTNGKFGLFWNSMKEKSENFLDDTKGKASSGMQQLKSQ 72
Query: 322 LVQHV 308
L +++
Sbjct: 73 LEENI 77
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 94 RHGCCLFLTPLTRKTADIE 38
RHGCC+ L R DI+
Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 311 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 418
M +QARL+ L K+R+ + ++ +K LAE+ +D K
Sbjct: 92 MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 389 ACELRRVHYVHDLHALSVPSDELGSACSKIGSSSEVQPASPSFHSIP 249
AC R VH + ++ALS P A +I + + A S+P
Sbjct: 14 ACFRRFVHQIPTIYALSTPPGTSAVAIVRISGPNACKVAKTLAGSVP 60
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 365 YVHDLHALSVPSDEL 321
+V DLHAL+VP D L
Sbjct: 56 FVADLHALTVPQDPL 70
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 502 LTDADSDSGFHELEESLHNKCDQQL*VQFGV 410
+ D+ +SG HE+ + L N DQQL Q +
Sbjct: 507 ILDSLRESGIHEVIQLLRNFPDQQLEKQLNI 537
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 427 RAAGHTYCAGSLPAHGTHCHYPRPSNRQGS 516
RA+G+T+ P+ T+ YP N GS
Sbjct: 68 RASGYTHRFSIRPSSQTYNRYPNGGNSAGS 97
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 308 SKIGSSSEVQPASPSFHSI 252
S +G+SS+ + P FHS+
Sbjct: 164 SSVGNSSDFREVEPGFHSV 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,512
Number of Sequences: 5004
Number of extensions: 30049
Number of successful extensions: 97
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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