Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331B12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 83 1e-16
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 73 1e-13
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 69 2e-12
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 2.3
12_02_0312 + 17395716-17398112 29 3.0
09_02_0115 + 4413714-4414475 28 5.2
03_02_0011 - 4909292-4909434,4909520-4909626,4910100-4910171,491... 28 5.2
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 83.0 bits (196), Expect = 1e-16
Identities = 48/138 (34%), Positives = 72/138 (52%)
Frame = +2
Query: 95 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 274
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 275 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 454
I+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120
Query: 455 ALFQLMEPTVTIRVRQTD 508
L +L EP V +R R+ D
Sbjct: 121 GLLRLKEPAVLLRCRKED 138
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 73.3 bits (172), Expect = 1e-13
Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Frame = +2
Query: 95 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 274
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 275 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 451
I+ S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120
Query: 452 ----------QALFQLMEPTVTIRVRQTDKALV 520
Q+L +L EP+V +R R+ D+ V
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHV 153
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 68.9 bits (161), Expect = 2e-12
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 10/152 (6%)
Frame = +2
Query: 95 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 274
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 275 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 451
I+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IV
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Query: 452 ---------QALFQLMEPTVTIRVRQTDKALV 520
Q+L +L EP V +R R+ D+ LV
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELV 153
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 323 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 457
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>12_02_0312 + 17395716-17398112
Length = 798
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 296 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 439
++ +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>09_02_0115 + 4413714-4414475
Length = 253
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 424 LRAAGHTYCAGSLPAHGTHCHYPRPSNRQGS 516
LR H+ + SLP H H+PRP +GS
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGS 50
>03_02_0011 -
4909292-4909434,4909520-4909626,4910100-4910171,
4910713-4910803,4911136-4911272,4911377-4911417,
4911681-4911746,4912756-4913082
Length = 327
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 520 HQSLVGLTDADSDSGFHELEESLHN 446
HQS +DADSD G LEE+L++
Sbjct: 286 HQSTEEGSDADSDDGLPPLEENLNH 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,511,359
Number of Sequences: 37544
Number of extensions: 232630
Number of successful extensions: 577
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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