Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331B10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    30   0.24 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   0.56 
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    27   2.2  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    27   2.2  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    27   2.2  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   3.9  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    26   3.9  
SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit L16...    25   5.2  
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    25   5.2  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    25   5.2  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   5.2  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    25   6.8  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    25   6.8  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    25   6.8  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   9.0  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   9.0  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    25   9.0  

>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
 Frame = +3

Query: 120 PKETLQPPVSKQEPAEKESPILFLTYAQDGLPTAINIQEYVSNWTEI--PNVKVITLNNR 293
           P+E  Q P + +    K    L++   Q  +PT++ +  + + W+ I  P+ KV   + +
Sbjct: 208 PEEPFQKPDTAELFNMKSQTDLYIFKKQKSVPTSLEVSHFENFWSTISYPDCKVRVFDTK 267

Query: 294 R-------EETYQNPEKFIREYFEKAD 353
                   +E   N  K +   FEK D
Sbjct: 268 SGRAILELDENPSNAAKKVEALFEKED 294


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 428  CCIWYIFVV*GYFIYISCCYDWHNVVSLFKIFSYKFFRILVSFFSSIV 285
            C I Y +V    F+ +S CY  +  V ++ +  Y FF    + F  +V
Sbjct: 1292 CPIAYTYVRNSIFLILSICYTINICVKVYGLSFYYFFHSFWNMFDVVV 1339


>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 216 TAINIQEYVSNWTE--IPNVKVITLNNRREETYQNPEKFIREYFEKADYI 359
           T +N+   +  WT+  +   K  TLN  +++T +   +F+R  F    YI
Sbjct: 43  TILNMVVEIPRWTQAKLEITKEATLNPIKQDTKKGKLRFVRNCFPHHGYI 92


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 357 IVPIITTGYINEITSNNKNIPNTTENLDHK 446
           +V  + +GY+  I+ +  N+PN+TE+ + K
Sbjct: 512 VVSELESGYVGLISYDLSNLPNSTEDPERK 541


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 255 EIPNVKVITLNNRREETYQNPEKFIREYFEKADYIVPIITTGYINEITSNNK 410
           E+PNVK I  N+  E   +  EK +  Y   +D ++P    G  N +   NK
Sbjct: 144 ELPNVKRILANDLLENAVKTIEKNV-NYNNVSDIVIP--NKGDANAVMHMNK 192


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 392 FIYISCCYDWHNVVSLFKIF-SYKFFRILV 306
           F Y   CYD+ N++  +++F  Y ++ +L+
Sbjct: 46  FFYDRICYDYKNILLKYELFIIYYYYYLLI 75


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 324 FIREYFEKADYIVPIITTGYINEITSNNKNIPNTTE-NLDHKY 449
           F+R +F    +I+ I  TG    +  +++N+P+     L H +
Sbjct: 6   FLRRFFFLFCFIIRISCTGVFESVIKSSENVPDKVNVKLQHVF 48


>SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit
          L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 213

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 6  SARGITGKKEIVTLKNLPNDL 68
          +AR   GKKEI+  KN+  DL
Sbjct: 29 AARSYVGKKEIIVPKNIQFDL 49


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 336 YFEKADYIVPIITTGYINEITSNNKNIPNTTENLDHKYVNFIYNLIVNNYIHA 494
           Y E   +++P I T    ++ +  +NI + T   D + VN    ++    +HA
Sbjct: 59  YPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKDLQMVNINCRVLSRPDVHA 111


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -2

Query: 337 YSLINFSGFW*VSSLLLFNVMTLTFGISVQLLTYSCMLIAV 215
           Y +   S FW ++  +L +++T+TF ++   +  SC L+ +
Sbjct: 427 YLITQISLFWDIN--MLSSMITMTFLLTFGFINLSCFLLRI 465


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 357 IVPIITTGYINEITSNNKNIPNTTENLDHKYVNFI 461
           IVP     +I  I S+ + +P   E ++HK+ N +
Sbjct: 315 IVPFAPGHFIEYILSHPQVVPAWKEYINHKFTNML 349


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 234 EYVSNWTEIPNVKVITLNNRREETYQNPEKFIR 332
           E++   T  PN K I L +  ++   NPE F +
Sbjct: 35  EWIQKQTYPPNAKDINLEDMLDDEEWNPEAFYK 67


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +3

Query: 186 FLTYAQDGLP----TAINIQEYVSNWTEIPNVKVITLNNRR 296
           FL YA D  P    T I+   YVSN+T +   KV+   N R
Sbjct: 25  FLDYAVDKYPDFHFTCIDKLSYVSNYTTVFLSKVLNQPNFR 65


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 275 DFNIWYFRPITNIFLYVN 222
           +F +W+F  +   FLY+N
Sbjct: 175 NFKLWFFNEVYRHFLYIN 192


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 255 EIPNV-KVITLNNRREETYQNPEKFIRE 335
           ++PN+  ++T+N  R    + P+ F+RE
Sbjct: 901 KLPNIANIMTVNGHRYSVVELPDDFLRE 928


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 168 KESPILFLTYAQDGLPTAINIQEYVSNWTE 257
           + S +L L+Y  D L  A    ++V+ WT+
Sbjct: 297 RASCLLALSYLSDRLDAASQTTDFVNQWTK 326


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 126 ETLQPPVSKQEPAEKESPILFLTYAQDGLPTAI 224
           E + PPV    P+ +E   +  T    GLP  +
Sbjct: 225 EKMSPPVEPDPPSPEEICCIMYTSGSTGLPKGV 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,603
Number of Sequences: 5004
Number of extensions: 44455
Number of successful extensions: 140
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)