Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331B10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209... 34 0.080
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 32 0.32
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 30 1.3
08_02_1198 + 25204896-25206755 29 2.3
07_01_1207 + 11511754-11513865 29 2.3
07_03_0256 - 15875066-15877025,15877292-15877911 28 4.0
06_01_0317 + 2281564-2283855 28 4.0
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 28 5.2
07_01_1134 + 10614565-10615821 27 6.9
06_01_0450 + 3185342-3185645,3185761-3185837,3185948-3186028,318... 27 6.9
06_03_0437 - 20765682-20765951,20766040-20766294,20766374-207665... 27 9.1
04_04_0935 - 29509135-29511732 27 9.1
>06_03_0914 +
25920277-25920405,25920783-25920810,25920890-25920990,
25921356-25921479,25921793-25921903,25922222-25922397,
25922766-25922848,25922935-25923007,25923630-25923695,
25923776-25923818,25924600-25924739,25924878-25925090,
25925397-25925481,25925558-25925852,25926855-25927110,
25927237-25927450,25927701-25927912,25928054-25928203
Length = 832
Score = 33.9 bits (74), Expect = 0.080
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = +3
Query: 135 QPPVSKQEPAEKESPILFLTYAQDGLPTAINIQEYV-SNWTEIPNVKVITLNNRREETYQ 311
+ P+ E + KES + +P I + S W + N+ +I + N+ E +
Sbjct: 593 EEPIHSSEDS-KESKVKPYVIMDHQIPNMITLSLLPKSQWQSLANLDIIKVRNKPIEPPK 651
Query: 312 NPEKFIREYFEKADYIVPIITTGYINEITSNNKNIPNTTENLDHK 446
PEK +F VP ++ + E +N+K ++TE+ HK
Sbjct: 652 KPEK--APFFLPT---VPSLSGEILFEPAANSKETDSSTEDTSHK 691
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +3
Query: 327 IREYFEKADYIVPIITTGYINEITSNNKNIPNTTENLDHKYVNFIYNLIVNNYIHATGCL 506
+ + E +D + +T + E+ S N NT+++ Y N YN +NY A CL
Sbjct: 535 LSDRIESSDALSGKLTASVLQELISALTNDTNTSDSQHSNYSN-AYNSQHSNYSDAVDCL 593
Query: 507 NRKV 518
N +
Sbjct: 594 NNNM 597
>09_04_0076 +
14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 111 PKRPKETLQPPVSKQEPAEKESPILFLTYAQDGLPTAINIQEYVSNWT 254
P + K L+ PV P+L++ YA+ GL A NIQ YV ++T
Sbjct: 151 PTKIKTDLKKPVVNLA-CHPRLPVLYVAYAE-GLIRAYNIQTYVVHYT 196
>08_02_1198 + 25204896-25206755
Length = 619
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +3
Query: 378 GYINEITSNNKNIPNTTENLDHKYV--NFIYN--LIVNNY 485
G N++TS + NTTE L H+YV NF+ + +VNNY
Sbjct: 424 GMANQMTSLSH--VNTTETLQHQYVQGNFVSSPAAVVNNY 461
>07_01_1207 + 11511754-11513865
Length = 703
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 289 LFNVMTLTFGISVQLLTYSCML 224
LFN M +++GI Q+ YSCM+
Sbjct: 533 LFNKMVISYGIKPQMEHYSCMI 554
>07_03_0256 - 15875066-15877025,15877292-15877911
Length = 859
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -1
Query: 374 CYDWHNVVSLFKIFSYKFFRILVSFFS--SIV*CYDFNIWYFRPITNIFLYVNC 219
CY V + ++ IL+S F S +DF I + +T ++ Y+NC
Sbjct: 769 CYHMGLVFEAGSMAKLEYLHILISAFQVKSWDGSFDFGIQHLYCLTKVYAYINC 822
>06_01_0317 + 2281564-2283855
Length = 763
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 286 FNVMTLTFGISVQLLTYSCML 224
FN MT T+GI ++ Y+CM+
Sbjct: 644 FNAMTCTYGILPNIMHYACMV 664
>03_02_0594 -
9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 289 LFNVMTLTFGISVQLLTYSCMLIAVGR 209
+FN M FGIS + Y+CM+ A+ R
Sbjct: 754 VFNSMQAVFGISPVIEQYACMVSALSR 780
>07_01_1134 + 10614565-10615821
Length = 418
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 105 NDPKRPKETLQPPVSKQEPAEKESPI 182
N P R K +LQP V ++EP E+P+
Sbjct: 115 NQPPRTKSSLQPSVQRREP-NGENPL 139
>06_01_0450 +
3185342-3185645,3185761-3185837,3185948-3186028,
3186508-3186636,3186765-3186851,3186962-3187015,
3187432-3187522,3187615-3187685,3187770-3187839,
3187988-3188040,3188132-3188225,3188569-3188666,
3190126-3190209
Length = 430
Score = 27.5 bits (58), Expect = 6.9
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +3
Query: 57 PNDLPAALNKNIVLQNN--DPKRPKETLQPPVSKQEPAEKE--SPILFLTYAQDGL--PT 218
P LP + ++L N DP+ P LQ PVS+ A +E S F+ A+ G+
Sbjct: 355 PFSLPVIAPRPLLLLNGAEDPRCPVLGLQEPVSRAAKAYEEVGSADKFMFIAEPGIGHQM 414
Query: 219 AINIQEYVSNW 251
N+ + S+W
Sbjct: 415 TANMVKEASDW 425
>06_03_0437 -
20765682-20765951,20766040-20766294,20766374-20766545,
20766964-20767097,20767205-20767288,20767369-20767659,
20767867-20768214,20768321-20768496,20768579-20768695,
20768780-20768936,20769110-20769225,20769323-20769483,
20769567-20769883,20769969-20770250,20770347-20770648,
20771977-20772067,20773203-20773256,20773723-20773812
Length = 1138
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 276 ITLNNRREETYQNPEKFIREYFEKADYIVPII--TTGYINEITS 401
I L + + YQ P +++ E+FE + P T ++ E+TS
Sbjct: 139 IILLSEGQIVYQGPREYVLEFFESCGFRCPERKGTADFLQEVTS 182
>04_04_0935 - 29509135-29511732
Length = 865
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 292 LLFNVMTLTFGISVQLLTYSCMLIAVGR 209
L F++MT GIS L +SCM+ +GR
Sbjct: 626 LYFDMMTRVHGISPGLEHFSCMVDLLGR 653
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,083,302
Number of Sequences: 37544
Number of extensions: 224582
Number of successful extensions: 635
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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