Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331B10f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93391-2|CAB07681.1| 490|Caenorhabditis elegans Hypothetical pr... 31 0.38
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 30 1.2
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 30 1.2
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 30 1.2
AF078785-3|AAC27091.2| 481|Caenorhabditis elegans Hypothetical ... 29 1.5
Z81492-3|CAB04030.1| 382|Caenorhabditis elegans Hypothetical pr... 29 2.0
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 29 2.0
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 29 2.0
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 29 2.0
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 29 2.0
Z92804-1|CAB07252.1| 338|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z79597-1|CAB01861.1| 271|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z77655-6|CAB01139.1| 351|Caenorhabditis elegans Hypothetical pr... 27 8.1
U75587-1|AAB48299.1| 351|Caenorhabditis elegans caveolin-2 prot... 27 8.1
U58732-6|AAB00596.3| 333|Caenorhabditis elegans Serpentine rece... 27 8.1
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z93391-2|CAB07681.1| 490|Caenorhabditis elegans Hypothetical
protein W04G5.4 protein.
Length = 490
Score = 31.5 bits (68), Expect = 0.38
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 258 IPNVKVITLNNRREET---YQNPEKFIREYFEKADYIVPIITTGYINEITSNNKNIPNTT 428
IP K++ + N +T Y PE +R +F + Y+ PI E+ PN
Sbjct: 13 IPIKKILNIQNPNIDTLYIYVQPEPDLRLFFPISSYLKPI-------ELE------PNIE 59
Query: 429 ENLDHKYVNFIYNLIVNNYIH 491
EN Y+ F YN+I N Y H
Sbjct: 60 EN----YLKFTYNIIENTYSH 76
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 29.9 bits (64), Expect = 1.2
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +3
Query: 72 AALNKNIVLQNNDPKRPKETLQPPVSKQEPAEKESPILFLTYAQDGLPTAINIQEYVSNW 251
AALN+ IVL D +R ++ L+ SK E A K + A+ + T E +N+
Sbjct: 58 AALNRRIVLVEEDLERTEDRLKTATSKLEQATKAAD--EADRARKSMETRSQQDEERANF 115
Query: 252 --TEIPNVKVITLN-NRREETYQNPEKFIREYFEKAD 353
T++ KVI + +R+ E + E+A+
Sbjct: 116 LETQVDEAKVIAEDADRKYEEVARKLAMVEADLERAE 152
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 29.9 bits (64), Expect = 1.2
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +3
Query: 72 AALNKNIVLQNNDPKRPKETLQPPVSKQEPAEKESPILFLTYAQDGLPTAINIQEYVSNW 251
AALN+ IVL D +R ++ L+ SK E A K + A+ + T E +N+
Sbjct: 58 AALNRRIVLVEEDLERTEDRLKTATSKLEQATKAAD--EADRARKSMETRSQQDEERANF 115
Query: 252 --TEIPNVKVITLN-NRREETYQNPEKFIREYFEKAD 353
T++ KVI + +R+ E + E+A+
Sbjct: 116 LETQVDEAKVIAEDADRKYEEVARKLAMVEADLERAE 152
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 29.9 bits (64), Expect = 1.2
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Frame = +3
Query: 72 AALNKNIVLQNNDPKRPKETLQPPVSKQEPAEKESPILFLTYAQDGLPTAINIQEYVSNW 251
AALN+ IVL D +R ++ L+ SK E A K + A+ + T E +N+
Sbjct: 58 AALNRRIVLVEEDLERTEDRLKTATSKLEQATKAAD--EADRARKSMETRSQQDEERANF 115
Query: 252 --TEIPNVKVITLN-NRREETYQNPEKFIREYFEKAD 353
T++ KVI + +R+ E + E+A+
Sbjct: 116 LETQVDEAKVIAEDADRKYEEVARKLAMVEADLERAE 152
>AF078785-3|AAC27091.2| 481|Caenorhabditis elegans Hypothetical
protein C04E12.5 protein.
Length = 481
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 390 EITSNNKNIPNTTENLDHKYVNFIYNLIVNNYIH 491
EIT+ K I N H YV F Y+++ N Y H
Sbjct: 107 EITTQEKLI-QLNPNSGHNYVKFTYDILNNTYSH 139
>Z81492-3|CAB04030.1| 382|Caenorhabditis elegans Hypothetical
protein E03H4.6 protein.
Length = 382
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 341 KIFSYKFFRILVSFFSSIV*CYDFNIWYFRPITN 240
KIF FF+IL+ F +V C +F Y R I N
Sbjct: 11 KIFCTIFFQILLIFLLIVVDCLNFPNQYLRSIRN 44
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +3
Query: 291 RREETYQNPEKFIREYFEKADYIVPIITTGYINEITSNNK 410
+ E+ +NP F+ E + DY ++TT + ++ N+
Sbjct: 336 KNEDLLKNPVNFVNELLQLKDYFSSLLTTAFADDRDFKNR 375
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 72 AALNKNIVLQNNDPKRPKETLQPPVSKQEPAEK 170
AALN+ IVL D +R ++ L+ SK E A K
Sbjct: 58 AALNRRIVLVEEDLERTEDRLKTATSKLEQATK 90
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 72 AALNKNIVLQNNDPKRPKETLQPPVSKQEPAEK 170
AALN+ IVL D +R ++ L+ SK E A K
Sbjct: 58 AALNRRIVLVEEDLERTEDRLKTATSKLEQATK 90
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +3
Query: 291 RREETYQNPEKFIREYFEKADYIVPIITTGYINEITSNNK 410
+ E+ +NP F+ E + DY ++TT + ++ N+
Sbjct: 336 KNEDLLKNPVNFVNELLQLKDYFSSLLTTAFADDRDFKNR 375
>Z92804-1|CAB07252.1| 338|Caenorhabditis elegans Hypothetical
protein K05D4.2 protein.
Length = 338
Score = 28.7 bits (61), Expect = 2.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 428 CCIWYIFVV*GYFIYISCCYDWH 360
C +W + V+ + I+ CCY W+
Sbjct: 134 CFLWILLVLSNFSIWFYCCYIWN 156
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +3
Query: 39 VTLKNLPNDLPAALNKNIVLQNNDPKRPKETLQPPVSKQEPAEKESPILFLTYAQDGL 212
VTL++ P+D P + ++ + L P + K E E+E P++ +G+
Sbjct: 299 VTLQSGPSDAPPLSHNSVDGYSTGDDDAPPNLSPQIGKSENNEEEMPLIAPIVQHNGI 356
>Z79597-1|CAB01861.1| 271|Caenorhabditis elegans Hypothetical
protein C33A11.2 protein.
Length = 271
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 398 GYFIY-ISCCYDWHNVVSLFKIFSYKFFRILVSFFSSIV*CYDF 270
G+ IY I CY H V + + ++R++ + FS I C F
Sbjct: 135 GFSIYMIFQCYLTHRVTPTITLRTVFYYRVIFTIFSVICFCCSF 178
>Z77655-6|CAB01139.1| 351|Caenorhabditis elegans Hypothetical
protein C56A3.7 protein.
Length = 351
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = -1
Query: 356 VVSLFKIFSYKF----FRILVSFFSSIV*C-YDF-NIWYFRPI 246
+ + +I+SYK F ++++F I+ + F NIW FRPI
Sbjct: 251 IFEIVRIYSYKILTLIFGLIIAFLGGILFALFAFLNIWIFRPI 293
>U75587-1|AAB48299.1| 351|Caenorhabditis elegans caveolin-2
protein.
Length = 351
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = -1
Query: 356 VVSLFKIFSYKF----FRILVSFFSSIV*C-YDF-NIWYFRPI 246
+ + +I+SYK F ++++F I+ + F NIW FRPI
Sbjct: 251 IFEIVRIYSYKILTLIFGLIIAFLGGILFALFAFLNIWIFRPI 293
>U58732-6|AAB00596.3| 333|Caenorhabditis elegans Serpentine
receptor, class v protein5, isoform a protein.
Length = 333
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 186 FLTYAQDGLPTAINIQEYVSNWT 254
+LT+A + L +A+NI Y S WT
Sbjct: 102 YLTFALNRLTSALNISSYNSIWT 124
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 72 AALNKNIVLQNNDPKRPKETLQP-PVSKQEPAEKESP 179
AAL + + +QN+DP E+ + +S Q+P E +P
Sbjct: 447 AALRRQLAMQNDDPYSSDESTEALSLSCQKPKEDPTP 483
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,493,807
Number of Sequences: 27780
Number of extensions: 244183
Number of successful extensions: 910
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -