Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331B08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0019 - 7431578-7431583,7431650-7431868                           30   1.3  
05_06_0193 + 26279105-26279229,26279725-26279833,26280362-262804...    29   2.3  
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    29   3.0  
01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598           29   3.0  
02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459     28   4.0  
04_01_0445 + 5812277-5813893                                           28   5.2  
10_08_0183 - 15522241-15523866                                         27   9.1  

>05_03_0019 - 7431578-7431583,7431650-7431868
          Length = 74

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 155 MASRGGVMVTGTNGADFEHREKVAIQYHISA 247
           M  R G  V+GT+  D  HREK AI++  SA
Sbjct: 1   MHRRSGEQVSGTSAFDVLHREKAAIRFLGSA 31


>05_06_0193 +
           26279105-26279229,26279725-26279833,26280362-26280437,
           26280527-26281472,26281564-26281615,26281945-26282067,
           26282144-26282219,26282308-26282492,26282615-26282806,
           26282895-26282963,26283745-26283954,26285602-26285751,
           26286283-26286344,26286428-26286503,26286575-26286745
          Length = 873

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 480 CRR*RMLLRLIADRPRNESSNDKH 409
           CR  R  LR  A+ PR  +SNDKH
Sbjct: 34  CRARRRGLRTAAELPRKSTSNDKH 57


>03_06_0565 +
           34747278-34748066,34748170-34748406,34749777-34749869,
           34751752-34751988,34752398-34752584,34752956-34753028,
           34753145-34753289,34753670-34753779,34754127-34754258,
           34754328-34754469,34754545-34754679,34756278-34756435,
           34757327-34757401,34757505-34757643,34757838-34757952,
           34758016-34758107,34758500-34758613
          Length = 990

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 91  VCGCTIQRDSFLLFCTYF*SENGFPRWCYG 180
           +CGC +   S  L C+++ SE  F  WC G
Sbjct: 906 LCGCVVSDQSGGLQCSFYDSEKVF-AWCIG 934


>01_01_0163 - 1400504-1400521,1402082-1402215,1402466-1402598
          Length = 94

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -2

Query: 328 ICRELCHHPEEQYVVEEHTVLEAR--FVKCTY 239
           +C ELC H +  Y  E HT  E R   V+C++
Sbjct: 17  VCSELCMHTQIHYTEETHTGRERRREQVRCSW 48


>02_02_0436 - 10212611-10212984,10213213-10213642,10213660-10215459
          Length = 867

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = +2

Query: 134 VLIFSQKMASRGGVMVTGTNGADFEHREKVAIQYHISALNKSRLKYCV---FFHHILFLG 304
           V+ + +K+A +G  ++ G   + +    KVA Q  + A      KYC+    +  +L L 
Sbjct: 537 VVCWRRKLAKKGKEIIPGDFVSIWNFDAKVAFQDALYATENFDEKYCIGVGSYGSVLELR 596

Query: 305 MMAKLSADVLDKLDI--FILEVEEL 373
              KL   + D  DI  F+ E+E L
Sbjct: 597 SKEKLLHRMEDYFDIGAFLAEIEVL 621


>04_01_0445 + 5812277-5813893
          Length = 538

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 232 LYGYFF-TMFKISPVCPRHHNTTAGSH 155
           L G+FF T F +    P HH TT G+H
Sbjct: 374 LGGFFFMTAFMLGLAVPYHHWTTPGNH 400


>10_08_0183 - 15522241-15523866
          Length = 541

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 232 LYGYFF-TMFKISPVCPRHHNTTAGSH 155
           L G+F  T+F +    P HH TT G+H
Sbjct: 381 LLGFFMMTVFMLGLAVPYHHWTTKGNH 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,695,927
Number of Sequences: 37544
Number of extensions: 287508
Number of successful extensions: 557
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)