Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331B08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-2|CAB04568.1|  189|Caenorhabditis elegans Hypothetical pr...    63   1e-10
Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z32679-4|CAA83591.1|  315|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF125954-1|AAK68174.1|  340|Caenorhabditis elegans Serpentine re...    27   6.2  
AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.      27   6.2  
AC006769-2|AAF60583.2|  340|Caenorhabditis elegans Hypothetical ...    27   6.2  

>Z81564-2|CAB04568.1|  189|Caenorhabditis elegans Hypothetical
           protein K05C4.2 protein.
          Length = 189

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
 Frame = +2

Query: 155 MASRGGVMVTGTNGADFEHREKVAIQYHISALNKSRLKYCVFFHHILFLGMMAKLSADVL 334
           M+SRG V   GT+G DF++R++VA  Y  SA  KS LK+    H ++ + M  K+ +++L
Sbjct: 1   MSSRG-VRAAGTDGTDFQNRQRVAQHYQESAQYKSILKWFFVPHFLILVFMWLKVGSELL 59

Query: 335 -DKLDIFILEVEELQIPPPLWWEYIWCXXXXXXXXXXXAIKRNNIRHLRQYVYGIVALGF 511
                      + L +P    WEY+WC           + +RN ++ L    Y    +G 
Sbjct: 60  RTNFGWKNAFFDRLDMPSAYPWEYVWCFSFIPIVLAIYSFQRNKLKILHYAYYAEFVVGI 119

Query: 512 CP 517
            P
Sbjct: 120 FP 121


>Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical
           protein T23D8.1 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 190 CPRHHNTTAGSHF 152
           CP H +TT+GSHF
Sbjct: 181 CPHHMHTTSGSHF 193


>Z32679-4|CAA83591.1|  315|Caenorhabditis elegans Hypothetical
           protein C05B5.4 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 430 VSWSISNQT*QHTSPPAVCLWHSG 501
           +SW ++ Q  +HT  P V  W SG
Sbjct: 73  ISWPVTEQFLEHTVAPFVSYWPSG 96


>AF125954-1|AAK68174.1|  340|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 60 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 23/93 (24%), Positives = 42/93 (45%)
 Frame = +2

Query: 107 YNGIVFCCFVLIFSQKMASRGGVMVTGTNGADFEHREKVAIQYHISALNKSRLKYCVFFH 286
           Y G V+C    IF   +A+ GGV+   T      +   + I+YH        +K+ +F  
Sbjct: 84  YFGAVWCFNGYIFILSVATAGGVLNIHT-----LYYRMITIKYH------DNMKFRIFIF 132

Query: 287 HILFLGMMAKLSADVLDKLDIFILEVEELQIPP 385
            + +L  +A +    +  +D+  + +E LQ  P
Sbjct: 133 GLWYLFPIAIIVLSYIPPIDLDSVYLETLQAHP 165


>AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 190 CPRHHNTTAGSHF 152
           CP H +TT+GSHF
Sbjct: 181 CPHHMHTTSGSHF 193


>AC006769-2|AAF60583.2|  340|Caenorhabditis elegans Hypothetical
           protein Y45G12C.7 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 23/93 (24%), Positives = 42/93 (45%)
 Frame = +2

Query: 107 YNGIVFCCFVLIFSQKMASRGGVMVTGTNGADFEHREKVAIQYHISALNKSRLKYCVFFH 286
           Y G V+C    IF   +A+ GGV+   T      +   + I+YH        +K+ +F  
Sbjct: 84  YFGAVWCFNGYIFILSVATAGGVLNIHT-----LYYRMITIKYH------DNMKFRIFIF 132

Query: 287 HILFLGMMAKLSADVLDKLDIFILEVEELQIPP 385
            + +L  +A +    +  +D+  + +E LQ  P
Sbjct: 133 GLWYLFPIAIIVLSYIPPIDLDSVYLETLQAHP 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,140,601
Number of Sequences: 27780
Number of extensions: 237434
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)