Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331B08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.4  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   7.7  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 408 GACRCYSRFLVYQQSNVTTYVTSGSMFMA*WHWDSVR 518
           G+CR   + L + +  + TY+ + S ++   H  S+R
Sbjct: 274 GSCRKTDQILYFIRGCLQTYLINASTYLNEVHTASLR 310


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 408 GACRCYSRFLVYQQSNVTTYVTSGSMFMA*WHWDSVR 518
           G+CR   + L + +  + TY+ + S ++   H  S+R
Sbjct: 312 GSCRKTDQILYFIRGCLQTYLINASTYLNEVHTASLR 348


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 197 ADFEHREKVAIQYHISALNKSRLKYCVFF 283
           A+ + RE++   +   AL   R   CVFF
Sbjct: 409 AEQDRRERMEFDWKQVALVSDRALLCVFF 437


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 253 VKCTYVILYGYFFTMFKISPVCP 185
           ++C Y+ L     T + ++PV P
Sbjct: 5   LRCIYLFLSVILITSYFVTPVMP 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,024
Number of Sequences: 438
Number of extensions: 2990
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)