Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331B07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    29   0.42 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   3.0  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   5.2  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   6.8  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   9.0  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
 Frame = +3

Query: 51   YYEKRLKQIDI*VYINRY*TYLTNFYH-------FPGRYLLH 155
            Y+E+ L ++    Y+ +Y ++L  F+H        PG+YLLH
Sbjct: 3278 YFERLLSKVPKKQYLEQYSSFLCEFHHQKFDEIEVPGQYLLH 3319


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 204  KRDPFARFSRI-LN*LSSAVSSAPENDKNSSNMFNIYLCKLIYLFVSV 64
            K+     FSR+ L  LSS   +  END   SN+    L K+I  F  V
Sbjct: 3223 KKKVIEEFSRLSLGQLSSFAPAREENDNEGSNVVEPKLLKIIADFSDV 3270


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 518 SAFDVYKMPHHII**ALSSSKRNVKHTSDNESLQFTSTALLGKLNLI 378
           S  + Y++ +HI+   LS S +  K  SDN     T   L   LN++
Sbjct: 551 SRHEEYRIANHIVAYLLSRSLKQNKTESDNSFAILTKILLEDLLNML 597


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 317 IKVPFQSSAIIFFIYSLVGC 258
           +K  F S+  IFF+YSL  C
Sbjct: 71  LKTSFDSNETIFFLYSLHRC 90


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 161 LVVQ*VAPRKMIKIRQICLISIYVNLYIYLFQSLLIIHIDPDY 33
           L++Q    R+M+  + I L +  V L  Y+F   L++H +P Y
Sbjct: 548 LLIQDSKLREMVSEKCISLSNFNVFLE-YVFYGTLLMHFEPTY 589


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 255 GHSLPTTFKGTIN*QHSKRDPFARFSRILN 166
           GHSLP+     IN Q   R  +A  S+I++
Sbjct: 218 GHSLPSVLTQPINCQADARSFYAERSKIVH 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,868
Number of Sequences: 5004
Number of extensions: 38460
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)