Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331B07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0235 - 26609049-26609468,26610068-26610343,26611579-266117...    31   0.74 
10_02_0186 + 6399245-6399414,6444721-6444783,6444913-6445026,644...    27   9.1  
01_06_0463 + 29567339-29567644,29568416-29568835                       27   9.1  

>05_06_0235 -
           26609049-26609468,26610068-26610343,26611579-26611746,
           26611850-26611945
          Length = 319

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 191 KGSRFECC*FMVPLNVVGRLCPY 259
           KG+RF CC    PL VV  L PY
Sbjct: 116 KGTRFPCCIVWTPLPVVSWLAPY 138


>10_02_0186 +
           6399245-6399414,6444721-6444783,6444913-6445026,
           6445124-6445364,6446002-6446202,6446244-6446395,
           6446539-6446689
          Length = 363

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 270 AINKENNSRRLKWNFNSLTKVY 335
           A+N+E  + +LKWN + LT +Y
Sbjct: 227 AMNREKATWKLKWNMSLLTIIY 248


>01_06_0463 + 29567339-29567644,29568416-29568835
          Length = 241

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 191 KGSRFECC*FMVPLNVVGRLCPY 259
           K +RF CC    PL +V  L PY
Sbjct: 38  KRARFPCCIVWTPLPIVSWLAPY 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,529,066
Number of Sequences: 37544
Number of extensions: 195087
Number of successful extensions: 249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)