Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331B04f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT007424-1|AAP36092.1|  244|Homo sapiens cytoskeleton-associated...   108   1e-23
BC052812-1|AAH52812.1|  244|Homo sapiens tubulin folding cofacto...   108   1e-23
BC005969-1|AAH05969.1|  244|Homo sapiens tubulin folding cofacto...   108   1e-23
AF013488-1|AAB67716.1|  244|Homo sapiens tubulin folding cofacto...   107   2e-23
D49738-1|BAA08572.1|  193|Homo sapiens cytoskeleton associated p...    82   1e-15
CR541971-1|CAG46769.1|  193|Homo sapiens CKAP1 protein.                82   1e-15
AD001527-3|AAB51182.1|  201|Homo sapiens hypothetical 28.2Da pro...    72   1e-12
AY357942-1|AAQ57272.1|  288|Homo sapiens T cell receptor delta-c...    30   4.3  
AL049681-1|CAB41253.1|  500|Homo sapiens hypothetical protein pr...    29   7.5  

>BT007424-1|AAP36092.1|  244|Homo sapiens cytoskeleton-associated
           protein 1 protein.
          Length = 244

 Score =  108 bits (259), Expect = 1e-23
 Identities = 53/135 (39%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
 Frame = +2

Query: 86  DVLVITQDYVNVHITKSDNEDAAPIERRFKKGINILEFKTKLELLTGGSPTTMKLKLYDK 265
           +V  ++   V V I+ S N   +  E+R+ + + I EFK KLELL G   + M+L+LY  
Sbjct: 2   EVTGVSAPTVTVFISSSLNTFRS--EKRYSRSLTIAEFKCKLELLVGSPASCMELELYGV 59

Query: 266 KNNFVCDIEDDEKLLGSYPIDDGMRIHVID-KFSLVNDFATSDSAERFRLSEEDYEKKGD 442
            + F   ++ ++ LLGSYP+DDG RIHVID   + + ++      E++ +S+E Y+++ D
Sbjct: 60  DDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQD 119

Query: 443 TLRSFLQRNRLGKYN 487
           T+RSFL+R++LG+YN
Sbjct: 120 TVRSFLKRSKLGRYN 134


>BC052812-1|AAH52812.1|  244|Homo sapiens tubulin folding cofactor B
           protein.
          Length = 244

 Score =  108 bits (259), Expect = 1e-23
 Identities = 53/135 (39%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
 Frame = +2

Query: 86  DVLVITQDYVNVHITKSDNEDAAPIERRFKKGINILEFKTKLELLTGGSPTTMKLKLYDK 265
           +V  ++   V V I+ S N   +  E+R+ + + I EFK KLELL G   + M+L+LY  
Sbjct: 2   EVTGVSAPTVTVFISSSLNTFRS--EKRYSRSLTIAEFKCKLELLVGSPASCMELELYGV 59

Query: 266 KNNFVCDIEDDEKLLGSYPIDDGMRIHVID-KFSLVNDFATSDSAERFRLSEEDYEKKGD 442
            + F   ++ ++ LLGSYP+DDG RIHVID   + + ++      E++ +S+E Y+++ D
Sbjct: 60  DDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQD 119

Query: 443 TLRSFLQRNRLGKYN 487
           T+RSFL+R++LG+YN
Sbjct: 120 TVRSFLKRSKLGRYN 134


>BC005969-1|AAH05969.1|  244|Homo sapiens tubulin folding cofactor B
           protein.
          Length = 244

 Score =  108 bits (259), Expect = 1e-23
 Identities = 53/135 (39%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
 Frame = +2

Query: 86  DVLVITQDYVNVHITKSDNEDAAPIERRFKKGINILEFKTKLELLTGGSPTTMKLKLYDK 265
           +V  ++   V V I+ S N   +  E+R+ + + I EFK KLELL G   + M+L+LY  
Sbjct: 2   EVTGVSAPTVTVFISSSLNTFRS--EKRYSRSLTIAEFKCKLELLVGSPASCMELELYGV 59

Query: 266 KNNFVCDIEDDEKLLGSYPIDDGMRIHVID-KFSLVNDFATSDSAERFRLSEEDYEKKGD 442
            + F   ++ ++ LLGSYP+DDG RIHVID   + + ++      E++ +S+E Y+++ D
Sbjct: 60  DDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQD 119

Query: 443 TLRSFLQRNRLGKYN 487
           T+RSFL+R++LG+YN
Sbjct: 120 TVRSFLKRSKLGRYN 134


>AF013488-1|AAB67716.1|  244|Homo sapiens tubulin folding cofactor B
           protein.
          Length = 244

 Score =  107 bits (258), Expect = 2e-23
 Identities = 53/135 (39%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
 Frame = +2

Query: 86  DVLVITQDYVNVHITKSDNEDAAPIERRFKKGINILEFKTKLELLTGGSPTTMKLKLYDK 265
           +V  ++   V V I+ S N   +  E+R+ + + I EFK KLELL G   + M+L+LY  
Sbjct: 2   EVTGVSAPTVTVFISSSLNTFRS--EKRYSRSLTIAEFKCKLELLVGSPASCMELELYGV 59

Query: 266 KNNFVCDIEDDEKLLGSYPIDDGMRIHVID-KFSLVNDFATSDSAERFRLSEEDYEKKGD 442
            + F   ++ ++ LLGSYP+DDG RIHVID   + + ++      E++ +S+E Y+++ D
Sbjct: 60  DDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQD 119

Query: 443 TLRSFLQRNRLGKYN 487
           T+RSFL+R +LG+YN
Sbjct: 120 TVRSFLKRRKLGRYN 134


>D49738-1|BAA08572.1|  193|Homo sapiens cytoskeleton associated
           protein protein.
          Length = 193

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 35/83 (42%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
 Frame = +2

Query: 242 MKLKLYDKKNNFVCDIEDDEKLLGSYPIDDGMRIHVID-KFSLVNDFATSDSAERFRLSE 418
           M+L+LY   + F   ++ ++ LLGSYP+DDG RIHVID   + + ++      E++ +S+
Sbjct: 1   MELELYGVDDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQ 60

Query: 419 EDYEKKGDTLRSFLQRNRLGKYN 487
           E Y+++ DT+RSFL+R++LG+YN
Sbjct: 61  EAYDQRQDTVRSFLKRSKLGRYN 83


>CR541971-1|CAG46769.1|  193|Homo sapiens CKAP1 protein.
          Length = 193

 Score = 81.8 bits (193), Expect = 1e-15
 Identities = 35/83 (42%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
 Frame = +2

Query: 242 MKLKLYDKKNNFVCDIEDDEKLLGSYPIDDGMRIHVID-KFSLVNDFATSDSAERFRLSE 418
           M+L+LY   + F   ++ ++ LLGSYP+DDG RIHVID   + + ++      E++ +S+
Sbjct: 1   MELELYGVDDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQ 60

Query: 419 EDYEKKGDTLRSFLQRNRLGKYN 487
           E Y+++ DT+RSFL+R++LG+YN
Sbjct: 61  EAYDQRQDTVRSFLKRSKLGRYN 83


>AD001527-3|AAB51182.1|  201|Homo sapiens hypothetical 28.2Da
           protein from human chromosome 19 protein.
          Length = 201

 Score = 71.7 bits (168), Expect = 1e-12
 Identities = 35/91 (38%), Positives = 59/91 (64%), Gaps = 9/91 (9%)
 Frame = +2

Query: 242 MKLKLYDKKNNFVCDIEDDEKLLGSYPIDDGMRIHVID-KFSLVNDFATSDSAERFRLSE 418
           M+L+LY   + F   ++ ++ LLGSYP+DDG RIHVID   + + ++      E++ +S+
Sbjct: 1   MELELYGVDDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQ 60

Query: 419 EDYEKK--------GDTLRSFLQRNRLGKYN 487
           E Y+++         DT+RSFL+R++LG+YN
Sbjct: 61  EAYDQRQGTGRWASRDTVRSFLKRSKLGRYN 91


>AY357942-1|AAQ57272.1|  288|Homo sapiens T cell receptor
           delta-chain protein.
          Length = 288

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 188 ILEFKTKLELLTGGSPTTMKLKLYDKKNNFVCDIEDDEKLLGS 316
           I EF   + +  GG    +KL  Y+  N+  C ++ D K + S
Sbjct: 175 ITEFDPAIVISPGGKYNAVKLGKYEDSNSVTCSVQHDNKTVHS 217


>AL049681-1|CAB41253.1|  500|Homo sapiens hypothetical protein
           protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 296 HLLYHIQSCFSCHIILISLWLGTR 225
           HLL +IQ CF C  + +S+W   R
Sbjct: 10  HLLDYIQICFPCRFMKMSIWTPPR 33


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,282,333
Number of Sequences: 237096
Number of extensions: 1200320
Number of successful extensions: 5763
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5756
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)