Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331B03f
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom... 121 3e-29
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|... 92 3e-20
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|... 92 3e-20
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 31 0.051
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 30 0.089
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 0.63
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 4.4
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 24 5.9
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 24 7.8
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 24 7.8
>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 171
Score = 121 bits (292), Expect = 3e-29
Identities = 59/73 (80%), Positives = 66/73 (90%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KDLKVKRITPR
Sbjct: 64 LQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVKRITPR 123
Query: 309 HLQLAIRGDEXLD 347
HLQLAIRGDE LD
Sbjct: 124 HLQLAIRGDEELD 136
>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
3|||Manual
Length = 132
Score = 91.9 bits (218), Expect = 3e-20
Identities = 47/73 (64%), Positives = 55/73 (75%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
L FPVGR+HR L+ + RVGA A VY AA+LEYL AE+LELAGNA++D K RI PR
Sbjct: 25 LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLAIR DE L+
Sbjct: 84 HLQLAIRNDEELN 96
>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 91.9 bits (218), Expect = 3e-20
Identities = 47/73 (64%), Positives = 55/73 (75%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
L FPVGR+HR L+ + RVGA A VY AA+LEYL AE+LELAGNA++D K RI PR
Sbjct: 25 LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLAIR DE L+
Sbjct: 84 HLQLAIRNDEELN 96
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 31.1 bits (67), Expect = 0.051
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +3
Query: 132 QFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 311
+FPV RI + + G+V V + LE +++ + ++ + KR+T H
Sbjct: 23 RFPVARIKK-IMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSH 81
Query: 312 LQLAIRGDEXLD 347
L+ A++ E D
Sbjct: 82 LKHAVQSVEQFD 93
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 30.3 bits (65), Expect = 0.089
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 221 RYFGISYSRGFGVGGKCV*RFKSEAYYSSALTTCY 325
+Y G +YS G V GKCV +F + + +T Y
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFLVGTSSTRY 345
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.5 bits (58), Expect = 0.63
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 334 SPLIASCKCRGVIRFTFKS-LDAFPANSKTSAVRYSKIAAE*TAAVAPTRPWLVVLFLRC 158
SPL CKC G IR+ + L + +SK + K E T + + P + + C
Sbjct: 19 SPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKVYSESMPRTIPFTILC 78
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 24.6 bits (51), Expect = 4.4
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +1
Query: 82 LVKPRRKLSQDQLEQDFSFPLEE--FIGILR 168
L + +RKL + +L+ F F LEE F+G+++
Sbjct: 644 LDEDKRKLEEAKLQSRFLFGLEELRFLGLIK 674
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 24.2 bits (50), Expect = 5.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 229 WNILQQRFWSWREMRLKI*K 288
WN+ W W E++ KI K
Sbjct: 570 WNVNPTDLWDWAELKEKIAK 589
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 23.8 bits (49), Expect = 7.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 132 QFPVGRIHRHLKNRTTSHGRVGAT 203
+FP+G+ +R +RTTS V +T
Sbjct: 166 KFPLGKSYRPKASRTTSSQSVAST 189
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 23.8 bits (49), Expect = 7.8
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +1
Query: 160 ILRIGQQATGA*ELRQQF--ILPLF 228
+LR+G+QA+G L++ F IL LF
Sbjct: 390 LLRVGEQASGGKPLKEVFSEILDLF 414
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,230,965
Number of Sequences: 5004
Number of extensions: 19908
Number of successful extensions: 64
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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