Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331B03f
(347 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61953-11|AAC48074.1| 140|Caenorhabditis elegans Hypothetical p... 136 3e-33
Z93388-8|CAB07656.1| 127|Caenorhabditis elegans Hypothetical pr... 94 2e-20
Z92789-4|CAB07221.1| 127|Caenorhabditis elegans Hypothetical pr... 94 2e-20
Z83245-10|CAB05838.1| 127|Caenorhabditis elegans Hypothetical p... 94 2e-20
Z83245-6|CAB05836.1| 127|Caenorhabditis elegans Hypothetical pr... 94 2e-20
Z82271-4|CAB05212.1| 127|Caenorhabditis elegans Hypothetical pr... 94 2e-20
Z81495-2|CAB04056.1| 127|Caenorhabditis elegans Hypothetical pr... 94 2e-20
Z81128-6|CAB03399.1| 127|Caenorhabditis elegans Hypothetical pr... 94 2e-20
Z73102-8|CAA97414.1| 127|Caenorhabditis elegans Hypothetical pr... 94 2e-20
Z70750-11|CAA94747.1| 127|Caenorhabditis elegans Hypothetical p... 94 2e-20
X15633-1|CAA33641.1| 127|Caenorhabditis elegans histone protein... 94 2e-20
U64845-8|AAC48024.1| 127|Caenorhabditis elegans Histone protein... 94 2e-20
U64843-8|AAF98222.1| 127|Caenorhabditis elegans Histone protein... 94 2e-20
U64843-5|AAF98219.1| 127|Caenorhabditis elegans Histone protein... 94 2e-20
U58750-7|AAB00647.1| 127|Caenorhabditis elegans Histone protein... 94 2e-20
U40934-9|AAA81686.1| 127|Caenorhabditis elegans Histone protein... 94 2e-20
AF047656-4|AAC05100.1| 127|Caenorhabditis elegans Histone prote... 94 2e-20
AC024696-8|AAK84512.1| 127|Caenorhabditis elegans Histone prote... 94 2e-20
AC024696-5|AAK84506.1| 127|Caenorhabditis elegans Histone prote... 94 2e-20
Z68222-1|CAA92497.1| 145|Caenorhabditis elegans Hypothetical pr... 80 5e-16
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 29 0.69
AY126454-1|AAM95163.1| 555|Caenorhabditis elegans nesprin-like ... 29 0.69
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 0.69
AC006624-2|AAF39784.2| 254|Caenorhabditis elegans Hypothetical ... 28 2.1
U42844-7|AAB53819.1| 331|Caenorhabditis elegans Skn-1 dependent... 26 6.4
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 26 8.5
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 26 8.5
>U61953-11|AAC48074.1| 140|Caenorhabditis elegans Hypothetical
protein R08C7.3 protein.
Length = 140
Score = 136 bits (330), Expect = 3e-33
Identities = 68/73 (93%), Positives = 68/73 (93%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGRIHR LK RTTS GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR
Sbjct: 28 LQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 87
Query: 309 HLQLAIRGDEXLD 347
HL LAIRGDE LD
Sbjct: 88 HLHLAIRGDEELD 100
>Z93388-8|CAB07656.1| 127|Caenorhabditis elegans Hypothetical
protein T10C6.12 protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>Z92789-4|CAB07221.1| 127|Caenorhabditis elegans Hypothetical
protein H02I12.7 protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>Z83245-10|CAB05838.1| 127|Caenorhabditis elegans Hypothetical
protein ZK131.10 protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>Z83245-6|CAB05836.1| 127|Caenorhabditis elegans Hypothetical
protein ZK131.6 protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>Z82271-4|CAB05212.1| 127|Caenorhabditis elegans Hypothetical
protein F54E12.5 protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>Z81495-2|CAB04056.1| 127|Caenorhabditis elegans Hypothetical
protein F08G2.2 protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>Z81128-6|CAB03399.1| 127|Caenorhabditis elegans Hypothetical
protein T23D8.6 protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>Z73102-8|CAA97414.1| 127|Caenorhabditis elegans Hypothetical
protein B0035.7 protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>Z70750-11|CAA94747.1| 127|Caenorhabditis elegans Hypothetical
protein C50F4.13 protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>X15633-1|CAA33641.1| 127|Caenorhabditis elegans histone protein
protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>U64845-8|AAC48024.1| 127|Caenorhabditis elegans Histone protein 7
protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>U64843-8|AAF98222.1| 127|Caenorhabditis elegans Histone protein 19
protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>U64843-5|AAF98219.1| 127|Caenorhabditis elegans Histone protein 21
protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>U58750-7|AAB00647.1| 127|Caenorhabditis elegans Histone protein 61
protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>U40934-9|AAA81686.1| 127|Caenorhabditis elegans Histone protein 30
protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>AF047656-4|AAC05100.1| 127|Caenorhabditis elegans Histone protein
33 protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>AC024696-8|AAK84512.1| 127|Caenorhabditis elegans Histone protein
53 protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>AC024696-5|AAK84506.1| 127|Caenorhabditis elegans Histone protein
51 protein.
Length = 127
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
LQFPVGR+HR L+ + RVGA A VY AA+LEYL AEVLELAGNA++D K RI PR
Sbjct: 25 LQFPVGRLHRILRKGNYAQ-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPR 83
Query: 309 HLQLAIRGDEXLD 347
HLQLA+R DE L+
Sbjct: 84 HLQLAVRNDEELN 96
>Z68222-1|CAA92497.1| 145|Caenorhabditis elegans Hypothetical
protein ZK1251.1 protein.
Length = 145
Score = 79.8 bits (188), Expect = 5e-16
Identities = 37/70 (52%), Positives = 49/70 (70%)
Frame = +3
Query: 129 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 308
L FPVGRIHR L+ T R+ A A+V+ AA LEYLT E++E++ A+ + K R+TPR
Sbjct: 36 LTFPVGRIHRKLRETTRGKQRISAGASVFMAATLEYLTTELMEMSAIAANESKKSRVTPR 95
Query: 309 HLQLAIRGDE 338
HL LAI GD+
Sbjct: 96 HLHLAIYGDQ 105
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 29.5 bits (63), Expect = 0.69
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +1
Query: 61 VVKRVKILVKPRRKLSQDQLEQDFSFPLEEFIGILRIGQQATGA*ELRQQFILPLFWNIL 240
+V R K ++ RR+ ++D++ + +EE I+ G Q+T ELR + WNI
Sbjct: 837 IVNRKKAILT-RRENNEDEIRESIR-DMEECDRIIE-GWQSTEIEELRAE------WNIK 887
Query: 241 QQRFWSWREMRLKI 282
F SW EM ++
Sbjct: 888 LSEFESWHEMMQQV 901
>AY126454-1|AAM95163.1| 555|Caenorhabditis elegans nesprin-like
protein protein.
Length = 555
Score = 29.5 bits (63), Expect = 0.69
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +1
Query: 61 VVKRVKILVKPRRKLSQDQLEQDFSFPLEEFIGILRIGQQATGA*ELRQQFILPLFWNIL 240
+V R K ++ RR+ ++D++ + +EE I+ G Q+T ELR + WNI
Sbjct: 149 IVNRKKAILT-RRENNEDEIRESIR-DMEECDRIIE-GWQSTEIEELRAE------WNIK 199
Query: 241 QQRFWSWREMRLKI 282
F SW EM ++
Sbjct: 200 LSEFESWHEMMQQV 213
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 29.5 bits (63), Expect = 0.69
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +1
Query: 61 VVKRVKILVKPRRKLSQDQLEQDFSFPLEEFIGILRIGQQATGA*ELRQQFILPLFWNIL 240
+V R K ++ RR+ ++D++ + +EE I+ G Q+T ELR + WNI
Sbjct: 837 IVNRKKAILT-RRENNEDEIRESIR-DMEECDRIIE-GWQSTEIEELRAE------WNIK 887
Query: 241 QQRFWSWREMRLKI 282
F SW EM ++
Sbjct: 888 LSEFESWHEMMQQV 901
>AC006624-2|AAF39784.2| 254|Caenorhabditis elegans Hypothetical
protein C53D5.2 protein.
Length = 254
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 346 SNXSSPLIASCKCRGVIRFTFKS 278
S S+PLI+ C+C G + F K+
Sbjct: 25 STRSNPLISPCRCSGTLLFVHKA 47
>U42844-7|AAB53819.1| 331|Caenorhabditis elegans Skn-1 dependent
zygotic transcriptprotein 2 protein.
Length = 331
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 231 EYLTAEVLELAGNASKDLKVKRITPRHLQL 320
EYL E E NASKD+ +K++ L+L
Sbjct: 38 EYLEKENREFVVNASKDIAMKKLALTLLEL 67
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +1
Query: 13 RSR-CSCDSVVHVSK-----WAVVKRVKILVKPRRKLSQDQLEQDFSFPLEEFIGILRIG 174
RSR +C + +SK W K++ ++ + ++ DF+ P++EF G + G
Sbjct: 622 RSRGVNCTNTKDISKGGCTIWLQEKKMLGEIEEHLGATISTVDSDFNVPVDEFDGKVVYG 681
Query: 175 QQATG 189
++ TG
Sbjct: 682 ERRTG 686
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 129 LQFPVG-RIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAG 266
+ F VG R+++ LKN++ + + AAV ++AI+ A V G
Sbjct: 245 IPFSVGKRVYKRLKNQSKAKRVISTAAAVTTSAIVSPAIAGVAVAIG 291
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,844,787
Number of Sequences: 27780
Number of extensions: 109676
Number of successful extensions: 307
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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