Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331B02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     69   2e-12
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     68   5e-12
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     67   9e-12
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    28   5.2  
12_01_0426 - 3356350-3356745,3357604-3357921                           27   9.1  
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842...    27   9.1  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
 Frame = +2

Query: 2   AFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKA 172
           +FLVK+    N K  FSKEPNN+ N+HS++++GL +KK V  V+    K   VV    K 
Sbjct: 18  SFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGKETAVVLSTTKT 76

Query: 173 TR--KPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 325
            +  KPA    +   +   R+    VK  +  N+YR DL K  L R SA+ RS
Sbjct: 77  EKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 129


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
 Frame = +2

Query: 5   FLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKKAKA 172
           FLVK+    N K  F+KEPNN+ N+HS++++GL +KK V +  +  +    V+   K K 
Sbjct: 19  FLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDAAVVLSTTKTKK 78

Query: 173 TRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 325
              PAK   +   +   R+    VK  +  N+YR DL K  L R S++ RS
Sbjct: 79  QNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
 Frame = +2

Query: 5   FLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKKAKA 172
           FLVK+    N K  F+KEPNN+ N+HS++++GL +KK V +  +  +    V+   K K 
Sbjct: 19  FLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKK 78

Query: 173 TRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 325
              PAK   +   +   R+    VK  +  N+YR DL K  L R S++ RS
Sbjct: 79  QNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 285 ARLPFVVLQPSSAPRGPSKQKRLRQPQPSR 374
           A  PF  +  +S+PR P   +  RQP P R
Sbjct: 10  ASAPFPTIPAASSPRNPRAARPRRQPAPFR 39


>12_01_0426 - 3356350-3356745,3357604-3357921
          Length = 237

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 466 ESYYNSLAVVLQRRDWXN 519
           ESYY    V +Q RDW N
Sbjct: 204 ESYYFKFGVYMQHRDWSN 221


>05_04_0210 +
           19082778-19082940,19083806-19083875,19084172-19084295,
           19084442-19084897
          Length = 270

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 332 ASGSGGWLKHDEG*PCIGLCGSG*P 258
           A GSGGW +  +G      CG+G P
Sbjct: 28  AEGSGGWRRRRDGHVARARCGAGEP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,950,931
Number of Sequences: 37544
Number of extensions: 286949
Number of successful extensions: 696
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)