Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331B02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   3.3  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   3.3  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   5.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   5.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.8  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 200 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 328
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQ 63


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 8  LVKKRNIKKPFSKEP 52
          L+KKRN   PF K P
Sbjct: 14 LLKKRNENDPFLKRP 28


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 169 LCFLVHYCESLPVRV 125
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 169 LCFLVHYCESLPVRV 125
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 169 LCFLVHYCESLPVRV 125
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 169 LCFLVHYCESLPVRV 125
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 169 LCFLVHYCESLPVRV 125
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -2

Query: 490 RPVNCNTTP 464
           RP++C+TTP
Sbjct: 656 RPISCHTTP 664


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 200 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 328
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQ 63


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 309  QPSSAPRGPSKQKRLRQPQPSR 374
            Q    P+  S+Q + +QPQP +
Sbjct: 1512 QQQQQPQQQSQQPQQQQPQPQQ 1533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,225
Number of Sequences: 438
Number of extensions: 2471
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)