Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331B01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0026 - 22222743-22222836,22223510-22223652,22224654-222246... 30 1.3
01_07_0297 - 42583439-42583697,42583763-42583953,42583995-425842... 30 1.3
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 29 2.3
05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737 29 2.3
09_02_0085 + 4111333-4111492,4114766-4116044,4116113-4116206,411... 29 3.0
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324... 29 3.0
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348... 28 4.0
03_05_0710 + 27038709-27038865,27039205-27039346,27039383-270395... 28 5.2
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 27 6.9
>04_04_0026 -
22222743-22222836,22223510-22223652,22224654-22224699,
22224916-22225043,22225178-22225285
Length = 172
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = -3
Query: 345 KEKGIFVVAKEKVGN-NTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASV--TKSFAN 175
KEK + G+ N+ SS + + D Y + I D + V TKS
Sbjct: 82 KEKDAIMFTHPPAGSFNSTGLVISSKLPRFSDMYTITIASADPQSISANKPVHFTKSVTK 141
Query: 174 FIDVNGTVVQNIVSNEITKLYHSLSSEKKEK 82
+ G +V+ + ++ +L ++E+K K
Sbjct: 142 WFTKEGVLVEGLFWKDVERLIDDYNTERKGK 172
>01_07_0297 -
42583439-42583697,42583763-42583953,42583995-42584201,
42584291-42584362,42584472-42584507
Length = 254
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 367 FDPLHYIQREGHLCGSQGEG 308
++ + IQREGHLCG G G
Sbjct: 182 YEIVRIIQREGHLCGMTGNG 201
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -3
Query: 228 RDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSEKK 88
RDT NT + +++S + V N++S++ T L + L+ K
Sbjct: 617 RDTKSNTDKPPISQSSGQIVSFTSNPVFNVISSKPTTLSNGLADTTK 663
>05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737
Length = 767
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -3
Query: 231 MRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSEKKE 85
++D NGN +A ++ + N D++ ++ + +ITK +LSS KE
Sbjct: 703 IKDFNGNHFDAVLSTALKNMSDIDNCMLFAVQDCQITKPARTLSSLVKE 751
>09_02_0085 +
4111333-4111492,4114766-4116044,4116113-4116206,
4116297-4116545
Length = 593
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -3
Query: 336 GIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVN 160
G+ V+A + +T V+ V +H DKY L++ T +TR ++ F+D++
Sbjct: 444 GLLVMASGDLHEHTAVFFR---VFRHHDKYKLLMCTDLTKSSTRAGVYKPAYGGFVDMD 499
>07_01_0426 +
3239274-3239386,3239472-3239702,3242516-3242642,
3242729-3242788,3242868-3242960,3243073-3243369,
3243450-3243761,3243857-3244114,3244227-3244375,
3244470-3245102,3245367-3245640,3245736-3245777,
3246332-3246586,3246700-3246711
Length = 951
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 448 MGLSLSIPSIKTGSNHLCVIIFHTDGYFDPLHY 350
M LSL +PS T + V +F TDG +P+ Y
Sbjct: 434 MYLSLPVPS--TAKRTMTVTVFSTDGSIEPISY 464
>07_01_0460 +
3486040-3486758,3486804-3486876,3487067-3487132,
3488090-3488251,3488427-3488457,3488767-3489206
Length = 496
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 435 YPFPQSRLVLIICVSSYFILMGILTLYTTFKE 340
YPF L++ IC S + ILTLYT +K+
Sbjct: 453 YPFLFDALMMFICFSQFV----ILTLYTNYKQ 480
>03_05_0710 +
27038709-27038865,27039205-27039346,27039383-27039558,
27039639-27039703,27040000-27040371,27040429-27040504,
27040505-27040571,27040672-27040825,27041122-27041289,
27041392-27041502,27041612-27041722,27041864-27041881,
27041917-27042018,27042587-27042817,27043390-27043464,
27043744-27043815,27044597-27044782,27044868-27045026,
27045251-27045343,27045730-27045801,27046336-27046426,
27046669-27046847,27047252-27047333,27047526-27047636,
27047715-27047821,27048194-27048271,27048357-27048452,
27048627-27048722,27048839-27048856
Length = 1154
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -2
Query: 451 AMGLSLSIPSIKTGSNHLCVIIFHTDGYFDPLHYIQR 341
A LSL +P +TG++ C +I + ++ +H++++
Sbjct: 282 ANDLSLRLPLFETGNSDDCYVIMKSSCWYGYIHWVKK 318
>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = -3
Query: 354 TTFKEKGIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGN 211
TTF E ++ A+ + T VW ++ D++ I++ T G+
Sbjct: 2458 TTFSEPAAWIRARAAYAHTTAVWSMVGHIVGLGDRHGENILLDSTTGD 2505
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,167,876
Number of Sequences: 37544
Number of extensions: 310232
Number of successful extensions: 674
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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