Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331B01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical ...    95   2e-20
U27312-13|AAA68256.1|  162|Caenorhabditis elegans Hypothetical p...    31   0.50 
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z50794-6|CAA90659.2|  388|Caenorhabditis elegans Hypothetical pr...    29   2.0  
L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protei...    29   2.0  
L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protei...    29   2.0  
AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell...    29   2.0  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   4.7  
AF036693-11|AAK29788.1|  392|Caenorhabditis elegans Hypothetical...    28   4.7  

>AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical
           protein Y37D8A.10 protein.
          Length = 180

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 46/115 (40%), Positives = 66/115 (57%)
 Frame = -3

Query: 447 WDYLYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVAKEKVGNNTRVWEASSYV 268
           +DY  PFP+S++VL +C  SYFI MGIL +Y  + EK     A E  G  +R W  SS +
Sbjct: 62  YDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSSEI 121

Query: 267 KKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSL 103
           K HDDKY L    +   G + +  +TKS   +ID +G ++  +V  E+  LY+ L
Sbjct: 122 KAHDDKYTLSAEFK-KEGRSGQGKITKSIGAYIDNDGEIIVPLVKKEVDDLYNRL 175


>U27312-13|AAA68256.1|  162|Caenorhabditis elegans Hypothetical
           protein F26A1.14 protein.
          Length = 162

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 21/82 (25%), Positives = 41/82 (50%)
 Frame = -3

Query: 285 EASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHS 106
           E S   K   + +  +I++R   G+ + +++ +   N  + NG +V+N VSN IT+    
Sbjct: 15  EISDIQKCLVEGHRTIILIRGVTGSGK-STLARELVNHSE-NGVIVKNDVSNNITRSVRK 72

Query: 105 LSSEKKEK*LILSICNLSRSDI 40
              E K   +++   N+ RS +
Sbjct: 73  FIDEDKHL-IVVDEENVQRSSV 93


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 204 HECCHSCLA*QLRDCIYRRVSLHKNWLPRPW 296
           HE  HS L  QL+  +  R   HKNWL   W
Sbjct: 46  HEFQHSELGAQLQSALENRAKNHKNWLEDWW 76


>Z50794-6|CAA90659.2|  388|Caenorhabditis elegans Hypothetical
           protein F59F5.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +3

Query: 84  FPSSQMRGCGTAW*SH*IQCF--ELQCRSRR*SWQTTWSRMPHE-CCHSCLA*QLRDC 248
           FPS Q RGC  A     I CF  + QC +R        SR+P   CCH C +    DC
Sbjct: 66  FPSGQ-RGCQYASNMDTIHCFCDQDQCNTRHKLGSYIPSRLPSVECCH-CTSRHGEDC 121


>L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -2

Query: 382 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCKETRR*IQSRNCYARHEWQHS* 203
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 202 GIRD 191
           G  D
Sbjct: 120 GDDD 123


>L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -2

Query: 382 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCKETRR*IQSRNCYARHEWQHS* 203
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 202 GIRD 191
           G  D
Sbjct: 120 GDDD 123


>AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell
           lineage protein 39 protein.
          Length = 253

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = -2

Query: 382 HTDGYFDPLHYIQREGHLCGSQGEGWK*HQGLGSQFLCKETRR*IQSRNCYARHEWQHS* 203
           H   Y+DP    Q   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 202 GIRD 191
           G  D
Sbjct: 120 GDDD 123


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 463  PLRTAMGL-SLSIPSIKTGSNHLC 395
            PL+  +GL S S+PS++TG+  LC
Sbjct: 1100 PLKCYVGLYSTSVPSLQTGAEQLC 1123


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 463  PLRTAMGL-SLSIPSIKTGSNHLC 395
            PL+  +GL S S+PS++TG+  LC
Sbjct: 1100 PLKCYVGLYSTSVPSLQTGAEQLC 1123


>AF036693-11|AAK29788.1|  392|Caenorhabditis elegans Hypothetical
           protein C49A9.1 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -3

Query: 342 EKGIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDV 163
           E G F     K  +N + WE   Y  K +   N  +V+ + NGN  +  +T +  N+   
Sbjct: 280 ELGYFFEGIFKQKSNGK-WECEQYNNKIEPLINGTVVINEYNGN-EKVELTTTVTNYKPK 337

Query: 162 NGT 154
           N T
Sbjct: 338 NNT 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,326,405
Number of Sequences: 27780
Number of extensions: 273197
Number of successful extensions: 712
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)