Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331A08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc... 72 6e-14
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch... 71 8e-14
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 27 1.3
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 1.7
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 5.2
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 6.8
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc... 25 6.8
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 6.8
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 25 6.8
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 6.8
>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 99
Score = 71.7 bits (168), Expect = 6e-14
Identities = 35/68 (51%), Positives = 47/68 (69%)
Frame = -1
Query: 299 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 120
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA K K
Sbjct: 13 KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 119 RRLGTHPR 96
+RLGT R
Sbjct: 73 KRLGTLKR 80
>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
L36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 99
Score = 71.3 bits (167), Expect = 8e-14
Identities = 35/68 (51%), Positives = 47/68 (69%)
Frame = -1
Query: 299 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 120
K +T + + RP+R KG +K + FVR +VREV G A YE+R MEL++ S+DKRA K K
Sbjct: 13 KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72
Query: 119 RRLGTHPR 96
+RLGT R
Sbjct: 73 KRLGTLKR 80
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 87 SVKNLATCSLR*GRQPPRLITITI 16
SVKNL SL+ PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Frame = -3
Query: 213 STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 112
+TR+C T+S+ EEG+ V+ +KR+ +++L+A I
Sbjct: 928 ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 156 GVKRQACSEVLEATIGHTSAPRGS 85
G + S VLEA +GH P+GS
Sbjct: 270 GSQSSGKSSVLEAIVGHEFLPKGS 293
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 142 LSFDTLSNSIALFSY*ACPTTS 207
+S+D+LS+ +++ S+ CP T+
Sbjct: 79 MSYDSLSDDVSVLSFLDCPLTT 100
>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
scaffold protein Isu1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 269 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 165
RPA L+ L+T SKFV + V Y K ++
Sbjct: 27 RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 23 MVMSLGGCLPHLSEHVAKFFTLPLGADVCPIVASRTSEHACLLTP 157
+V SL G L + A+FFT PL ++VC ++ ++ P
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVIVNP 588
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 215 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL 111
++RE +G + K + ++ K ALKF+ R+L
Sbjct: 35 IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQL 69
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 154 TLSNSIALFSY*ACPTTSRTKSRTNLECF 240
T+++S LF+ A T+ TKS N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,973
Number of Sequences: 5004
Number of extensions: 39646
Number of successful extensions: 104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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