Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331A08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 83 2e-16
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 81 4e-16
07_03_0078 - 13147741-13148913 30 0.98
09_02_0089 + 4143800-4144117,4144191-4144439 30 1.3
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 5.2
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 28 5.2
03_06_0754 - 36025579-36027000 27 6.9
01_04_0062 - 15563978-15564616,15564687-15565604 27 6.9
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 82.6 bits (195), Expect = 2e-16
Identities = 46/87 (52%), Positives = 54/87 (62%)
Frame = -1
Query: 347 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 168
VG+ KGH TK + + RP+ KG TK FVR L+REVVG A YEKR
Sbjct: 12 VGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRIT 61
Query: 167 ELLKVSKDKRALKFLKRRLGTHPRQEE 87
ELLKV KDKRALK KR+LGTH R ++
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKK 88
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -2
Query: 106 HIRAKRKREELSNVLAQMR 50
H RAK+KREE++ V+ +MR
Sbjct: 83 HKRAKKKREEMAGVIRKMR 101
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 81.4 bits (192), Expect = 4e-16
Identities = 45/87 (51%), Positives = 54/87 (62%)
Frame = -1
Query: 347 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 168
VG+ KGH TK + + RP+ KG TK FVR+L+REV G A YEKR
Sbjct: 12 VGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAPYEKRIT 61
Query: 167 ELLKVSKDKRALKFLKRRLGTHPRQEE 87
ELLKV KDKRALK KR+LGTH R ++
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKK 88
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -2
Query: 106 HIRAKRKREELSNVLAQMR 50
H RAK+KREE++ VL +MR
Sbjct: 83 HKRAKKKREEMAGVLRKMR 101
>07_03_0078 - 13147741-13148913
Length = 390
Score = 30.3 bits (65), Expect = 0.98
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 262 AGLILMALSVIPLRPADILVVLWPF 336
AGL+ AL VIP P + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>09_02_0089 + 4143800-4144117,4144191-4144439
Length = 188
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -1
Query: 434 PRKIWYFILVARLLLYPRAEFGTRRFEIAVGLRKGHKTTKISAG 303
PRK+W +LL +P E T R + A GLR+G T++ AG
Sbjct: 50 PRKMWIAKDGKQLLQWPIEEIETLRRKRAAGLRRG---TRLGAG 90
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = -1
Query: 284 KAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGT 105
+A + + A L+ + S+ ++LV E +G EK+ +ELL + +++ ++LK +
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697
Query: 104 HPR 96
R
Sbjct: 698 EER 700
>03_05_0488 - 24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -3
Query: 498 RFDLGSFIMYYSRKSSHCGNESQEDMVLHLGR*ITVVPSCRIRHEAF*NRSRPAKRPQNN 319
RF G I +S +++CG + +L LGR + VVP ++ H + P P+++
Sbjct: 891 RFAQGHLITLFSA-TNYCGTANNAGAILVLGRDLVVVP--KLIHPLPPAITSPETSPEHH 947
Query: 318 *NIRWPQ 298
W Q
Sbjct: 948 IEDTWMQ 954
>03_06_0754 - 36025579-36027000
Length = 473
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 464 PGKAVTAAMSPRKIWYFILVARLLLYPRAEFGTRRFEI 351
PG AA++PR W I + R+ PR R E+
Sbjct: 315 PGTLGAAALAPRYAWVIISIERMARSPRLVGAEERDEL 352
>01_04_0062 - 15563978-15564616,15564687-15565604
Length = 518
Score = 27.5 bits (58), Expect = 6.9
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +1
Query: 10 SLNGDGDEPGRLPSSSERARC*VLHASSWRGCVPNRRFKNFRARLSFDTLSNSIALFSY* 189
SL G GRLP S + H G +P+R ++ R L L
Sbjct: 26 SLRHGGGGGGRLPPSPWALPV-IGHLHHVAGALPHRAMRDLARRHGPLMLLRLCELRVVV 84
Query: 190 ACPT-TSRTKSRTNLECFV*RPFSLAGLILMALSV 291
AC +R ++T+ F RP + G +LMA SV
Sbjct: 85 ACTAEAAREVTKTHDLAFATRPITPTGKVLMADSV 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,880,285
Number of Sequences: 37544
Number of extensions: 271755
Number of successful extensions: 668
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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