Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331A08f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.               100   3e-21
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...   100   3e-21
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...   100   3e-21
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...   100   3e-21
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...   100   3e-21
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    42   0.002
U93871-1|AAB68767.1|  400|Homo sapiens RaP2 interacting protein ...    29   7.5  
CR456748-1|CAG33029.1|  405|Homo sapiens RPIP8 protein.                29   7.5  
BX537443-1|CAD97685.1|  400|Homo sapiens hypothetical protein pr...    29   7.5  
BC006194-1|AAH06194.1|  405|Homo sapiens RaP2 interacting protei...    29   7.5  
AF055026-1|AAC09366.1|  405|Homo sapiens RaP2 interacting protei...    29   7.5  
AB209802-1|BAD93039.1|  481|Homo sapiens RaP2 interacting protei...    29   7.5  

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score =  100 bits (240), Expect = 3e-21
 Identities = 52/89 (58%), Positives = 64/89 (71%)
 Frame = -1

Query: 362 RFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY 183
           R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G A Y
Sbjct: 4   RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53

Query: 182 EKRAMELLKVSKDKRALKFLKRRLGTHPR 96
           E+RAMELLKVSKDKRALKF+K+R+GTH R
Sbjct: 54  ERRAMELLKVSKDKRALKFIKKRVGTHIR 82



 Score = 40.7 bits (91), Expect = 0.003
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = -2

Query: 106 HIRAKRKREELSNVLAQMRK 47
           HIRAKRKREELSNVLA MRK
Sbjct: 80  HIRAKRKREELSNVLAAMRK 99


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  100 bits (240), Expect = 3e-21
 Identities = 52/89 (58%), Positives = 64/89 (71%)
 Frame = -1

Query: 362 RFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY 183
           R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G A Y
Sbjct: 4   RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53

Query: 182 EKRAMELLKVSKDKRALKFLKRRLGTHPR 96
           E+RAMELLKVSKDKRALKF+K+R+GTH R
Sbjct: 54  ERRAMELLKVSKDKRALKFIKKRVGTHIR 82



 Score = 40.7 bits (91), Expect = 0.003
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = -2

Query: 106 HIRAKRKREELSNVLAQMRK 47
           HIRAKRKREELSNVLA MRK
Sbjct: 80  HIRAKRKREELSNVLAAMRK 99


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  100 bits (240), Expect = 3e-21
 Identities = 52/89 (58%), Positives = 64/89 (71%)
 Frame = -1

Query: 362 RFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY 183
           R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G A Y
Sbjct: 4   RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53

Query: 182 EKRAMELLKVSKDKRALKFLKRRLGTHPR 96
           E+RAMELLKVSKDKRALKF+K+R+GTH R
Sbjct: 54  ERRAMELLKVSKDKRALKFIKKRVGTHIR 82



 Score = 40.7 bits (91), Expect = 0.003
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = -2

Query: 106 HIRAKRKREELSNVLAQMRK 47
           HIRAKRKREELSNVLA MRK
Sbjct: 80  HIRAKRKREELSNVLAAMRK 99


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  100 bits (240), Expect = 3e-21
 Identities = 52/89 (58%), Positives = 64/89 (71%)
 Frame = -1

Query: 362 RFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY 183
           R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G A Y
Sbjct: 4   RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53

Query: 182 EKRAMELLKVSKDKRALKFLKRRLGTHPR 96
           E+RAMELLKVSKDKRALKF+K+R+GTH R
Sbjct: 54  ERRAMELLKVSKDKRALKFIKKRVGTHIR 82



 Score = 40.7 bits (91), Expect = 0.003
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = -2

Query: 106 HIRAKRKREELSNVLAQMRK 47
           HIRAKRKREELSNVLA MRK
Sbjct: 80  HIRAKRKREELSNVLAAMRK 99


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score =  100 bits (240), Expect = 3e-21
 Identities = 52/89 (58%), Positives = 64/89 (71%)
 Frame = -1

Query: 362 RFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY 183
           R+ +AVGL KGHK TK             + R +R +G  TKH+KFVRD++REV G A Y
Sbjct: 4   RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53

Query: 182 EKRAMELLKVSKDKRALKFLKRRLGTHPR 96
           E+RAMELLKVSKDKRALKF+K+R+GTH R
Sbjct: 54  ERRAMELLKVSKDKRALKFIKKRVGTHIR 82



 Score = 40.7 bits (91), Expect = 0.003
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = -2

Query: 106 HIRAKRKREELSNVLAQMRK 47
           HIRAKRKREELSNVLA MRK
Sbjct: 80  HIRAKRKREELSNVLAAMRK 99


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 41.5 bits (93), Expect = 0.002
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = -1

Query: 161 LKVSKDKRALKFLKRRLGTHPR 96
           LKVSKDKRALKF+K+R+GTH R
Sbjct: 1   LKVSKDKRALKFIKKRVGTHIR 22



 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -2

Query: 106 HIRAKRKREELSN 68
           HIRAKRKREELSN
Sbjct: 20  HIRAKRKREELSN 32


>U93871-1|AAB68767.1|  400|Homo sapiens RaP2 interacting protein 8
           protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 317 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 165
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303


>CR456748-1|CAG33029.1|  405|Homo sapiens RPIP8 protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 317 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 165
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308


>BX537443-1|CAD97685.1|  400|Homo sapiens hypothetical protein
           protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 317 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 165
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303


>BC006194-1|AAH06194.1|  405|Homo sapiens RaP2 interacting protein 8
           protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 317 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 165
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308


>AF055026-1|AAC09366.1|  405|Homo sapiens RaP2 interacting protein 8
           protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 317 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 165
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308


>AB209802-1|BAD93039.1|  481|Homo sapiens RaP2 interacting protein 8
           variant protein.
          Length = 481

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 317 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 165
           +I   +KG  ++ +R+R ++LK L+ ++ +    L  E     Q EKR +E
Sbjct: 294 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 343


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,239,379
Number of Sequences: 237096
Number of extensions: 1475551
Number of successful extensions: 2970
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2965
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)