Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331A08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    88   4e-18
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    33   0.12 
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    33   0.12 
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    30   0.87 
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    28   3.5  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    28   3.5  
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 44/86 (51%), Positives = 60/86 (69%)
 Frame = -1

Query: 353 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 174
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 173 AMELLKVSKDKRALKFLKRRLGTHPR 96
            +E+L++SKDKRALKFLKRR+GTH R
Sbjct: 59  VLEMLRISKDKRALKFLKRRIGTHRR 84



 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -2

Query: 106 HIRAKRKREELSNVLAQMRK 47
           H RAK KREEL NV+   RK
Sbjct: 82  HRRAKGKREELQNVIIAQRK 101


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -1

Query: 269 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHPRQE 90
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL      L   P  E
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQALAIYVNTLKNVPAAE 738

Query: 89  E 87
           E
Sbjct: 739 E 739


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -1

Query: 269 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHPRQE 90
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL      L   P  E
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQALAIYVNTLKNVPAAE 735

Query: 89  E 87
           E
Sbjct: 736 E 736


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = -1

Query: 272 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR--------ALKFLKR 117
           ++  ++  L T    +   L+REV G   Y++R  E LK+ K+ +         LK++  
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETKMKTEKIQGLLKYIDE 199

Query: 116 RLGTHPRQEE 87
           RL T   ++E
Sbjct: 200 RLQTLENEKE 209


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = -1

Query: 257 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 138
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = -1

Query: 257 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 138
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 219 TDKLGVFRLKTL*SSWPNSDGFVCDTLAASGYFSCFVAFSQAYCDFKTPR 368
           T  LG  R  T+  SWPN      + + A+ + S   A S A C    P+
Sbjct: 655 TSGLGGMRHNTVVLSWPNDWKAEQEWVVANKFVSAIRAISAAKCAIMVPK 704


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 224 VRDLVREVVGHAQYEKRAMELLKV 153
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,482,051
Number of Sequences: 27780
Number of extensions: 224955
Number of successful extensions: 542
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)