Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331A06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 495 LLLITFVVKIMNKVVPQNFS-IKFVFYVM 412
           L+LI+ V  +  + +P+NF+  KF+ + M
Sbjct: 684 LILISTVYAVKTRKIPENFNESKFIGFTM 712


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 495 LLLITFVVKIMNKVVPQNFS-IKFVFYVM 412
           L+LI+ V  +  + +P+NF+  KF+ + M
Sbjct: 774 LILISTVYAVKTRKIPENFNESKFIGFTM 802


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 394 QRYEKLHYIKYKF 432
           +RYEKLH  K KF
Sbjct: 17  RRYEKLHNEKEKF 29


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 394 QRYEKLHYIKYKF 432
           +RYEKLH  K KF
Sbjct: 17  RRYEKLHNEKEKF 29


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 394 QRYEKLHYIKYKF 432
           +RYEKLH  K KF
Sbjct: 17  RRYEKLHNEKEKF 29


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 394 QRYEKLHYIKYKF 432
           +RYEKLH  K KF
Sbjct: 17  RRYEKLHNEKEKF 29


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 394 QRYEKLHYIKYKF 432
           +RYEKLH  K KF
Sbjct: 17  RRYEKLHNEKEKF 29


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 394 QRYEKLHYIKYKF 432
           +RYEKLH  K KF
Sbjct: 17  RRYEKLHNEKEKF 29


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 186 PPDGKWLPSPMDFSNA 233
           PPD  W P  + F+NA
Sbjct: 104 PPDKVWKPDIVLFNNA 119


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 400 YEKLHYIKYKFYTKILRNNFIHYFYHKRY 486
           Y+  +Y  Y  Y     NN+    Y+K Y
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNY 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,644
Number of Sequences: 438
Number of extensions: 3979
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)