Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS331A04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 27 1.3
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 3.0
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 25 5.2
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 5.2
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 5.2
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 25 5.2
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 25 5.2
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 25 5.2
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 25 6.8
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.8
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 25 9.0
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -1
Query: 188 NVFF-FCIN*PPNFAVHYYVSKRNLQTLQCMSLPTIQVKYIIMMVV 54
N++F F ++ F +++K+ L+ C + P+IQ I+MM+V
Sbjct: 272 NIYFGFSLSDAMKFENETFIAKKILENSPCPNQPSIQPFGILMMLV 317
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 326 VGNGSGLSRNPVLQKAVERFYNLPL-EFTSGGDA 228
V N SGL+ NPV A F NL L +FTS A
Sbjct: 464 VYNPSGLAFNPVNPNANNSFVNLNLIQFTSPSQA 497
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 5.2
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +3
Query: 459 CLHCWSMPFS 488
CL+CW++PFS
Sbjct: 69 CLNCWNVPFS 78
>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 100
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 187 FNI*NFTAMAAPFAASPPDVNSRGKL 264
F+I +F + PF ASPP +R KL
Sbjct: 30 FHIPDFLSFVFPFVASPPLAFARRKL 55
>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 358 KYYKVQTLKELLAMVLAFPEILCYRR 281
KYYK + ++++L + +ILC+ R
Sbjct: 140 KYYKEKAMQQVLQPFFSCSQILCFSR 165
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 518 PTMKINPLLLGERHAPTMKAMAENIDLSNIQLG 420
P+ I + RHAPT K A ++ ++ +LG
Sbjct: 255 PSEAIKSIHNNPRHAPTTKETANSLSIAAFRLG 287
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 461 AMAENIDLSNIQLGSVFKSLCDGLIENLHY 372
A A NIDL GSV S C +++ HY
Sbjct: 545 AHANNIDLEGACEGSVACSTCHVIVDPEHY 574
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 259 KL*KRSTAFCNTGFLERPEPLPTILLMFA 345
KL K+ FC G L PE PT+L F+
Sbjct: 293 KLAKKPVIFCGHGVLANPE-CPTLLRKFS 320
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 184 CFFFVLTDHQILPFIIMLVKGTCRHFSVCL 95
CFFF L + Q L FII++ + + CL
Sbjct: 85 CFFF-LKEQQTLKFIIIVFQSEIQENEYCL 113
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 441 VNIFGHCLHCWSMPFSKQKR 500
VN + L CWS + KQKR
Sbjct: 137 VNRKSNVLFCWSTAYQKQKR 156
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 314 SGLSRNPVLQKAVERFYNLPLEFTSGGD-AAKGAAIAVKF 198
+G+S V AV + N PL GGD AA+ A K+
Sbjct: 137 AGISACAVCDGAVPIYRNKPLAVVGGGDSAAEEAQFLTKY 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,040
Number of Sequences: 5004
Number of extensions: 43582
Number of successful extensions: 99
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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