Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331A04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0243 - 6192324-6192443,6193246-6193374,6193528-6193695,619...    28   5.2  
01_05_0012 + 17147764-17148141,17148316-17148465,17149360-171497...    28   5.2  
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    27   9.1  
03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711...    27   9.1  

>09_02_0243 -
           6192324-6192443,6193246-6193374,6193528-6193695,
           6193833-6194023,6194137-6194281,6195307-6195462
          Length = 302

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 473 PTMKAMAENIDLSNIQLGSVFK 408
           P +K + E +D+++ QLG VFK
Sbjct: 202 PLLKTLLEGVDMTDKQLGEVFK 223


>01_05_0012 +
           17147764-17148141,17148316-17148465,17149360-17149729,
           17149898-17150015,17150121-17150226,17150326-17150418,
           17150498-17150593,17151169-17151891,17152012-17152160,
           17153434-17153520,17153541-17153625
          Length = 784

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 323 GNGSGLSRNPVLQKAVERFYNLPLEFTSGGDAAKGAAIAVK 201
           G G    RN +L++  E    LP  F   GDA  G   A +
Sbjct: 59  GGGEASKRNAILRRVTELEDFLPFPFAVAGDATVGTRGAAR 99


>08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-269805,
            269895-270098,271532-271664,271810-271881,273106-273168,
            273252-275034,275169-275217
          Length = 1229

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
 Frame = -1

Query: 464  KAMAENIDLSNIQLGSVFKSLCDGLIENLHYMMPKEILQSANIKRIVGNGSGLSRNPVL- 288
            KAM  N  L +I +   F  LC  L+   H   P +++    I   + NG   + NP L 
Sbjct: 812  KAMCNNA-LFDILVSQKFALLCHLLLGTFHVNKPGDVIDLEKIDAKMRNGD-YAHNPALF 869

Query: 287  ----QKAVERFYNLPLEFT 243
                Q+  E+F  +  E T
Sbjct: 870  DDDIQQMWEKFEQVGQEMT 888


>03_05_0190 -
           21770610-21770641,21770741-21770811,21771058-21771168,
           21771249-21771500,21771584-21772086,21772188-21773234,
           21773361-21773768,21773814-21773956,21774020-21774053
          Length = 866

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -1

Query: 398 DGLIENLHYMMPKE---ILQSANIKRIVGNGSGLSRNPVLQKAVERFYNLPLEFTSGGDA 228
           DG   +  Y+ PKE   ++++ ++  +VGNG+   +    +K + +   +P   TS   +
Sbjct: 45  DGEEGDKDYIPPKEGPELIRNFHVYLLVGNGATAIKKTAEEKVLSQIDEVPANTTSSKKS 104

Query: 227 AKGAAI 210
            + A +
Sbjct: 105 ERSAKV 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,820,971
Number of Sequences: 37544
Number of extensions: 270783
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)