Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331A04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23453-8|AAC46759.1|  301|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine re...    28   4.7  
Z68006-2|CAA91996.1|  560|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U23453-8|AAC46759.1|  301|Caenorhabditis elegans Hypothetical
           protein B0252.5 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
 Frame = -1

Query: 500 PLLLG--ERHAPTMKAMAENIDLSNIQLGSVFKSLCDGLIENLHYMMPKEILQSANIKRI 327
           P+LL    R A   K  + +I   N Q G++ K+LCD ++E   Y++      S+++ + 
Sbjct: 154 PILLNIRARFAENEKNKSYSIHKRN-QNGAL-KALCDEIVEESTYVLNNGHPVSSDLIKK 211

Query: 326 VGNGSGLSRNPVLQKA-VERFYNLPLEFTSGGDAAKGAAIAVKF 198
           + N + LSR  +  +  +E       E  +        AIA  F
Sbjct: 212 IANINTLSRQVIANETKMENLVQDEFELAASKSKTSDKAIACSF 255


>AF067950-1|AAG24154.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein141 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -2

Query: 160 HQIL-PFIIMLVKGTCRHFSVCLF--PQYR 80
           H+I+  F IMLV  T  HF +C+F   QYR
Sbjct: 308 HEIMFLFSIMLVLNTISHFFICIFISSQYR 337


>Z68006-2|CAA91996.1|  560|Caenorhabditis elegans Hypothetical
           protein K09C8.3 protein.
          Length = 560

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +1

Query: 205 TAMAAPFAASPPDVNSRGKL*KRSTAFCNTGFLERPEPLPTILLMFALCN 354
           T +   + ASPP  N        S +FC   ++ R EP   + L F   N
Sbjct: 358 TCIRFKYFASPPKGNHINYQKVNSPSFCGLSYIGRVEPANPVYLSFQCGN 407


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,241,106
Number of Sequences: 27780
Number of extensions: 248262
Number of successful extensions: 558
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)