Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331A03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   3.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   5.2  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   5.2  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   6.8  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 161 VSYRLF*FAAKKKQMVDYFHDYSSI 235
           + YRL  FA  K     Y HDYS I
Sbjct: 408 IPYRLQVFATAKVTFFQYLHDYSYI 432


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 59   NYYHSAESGTAYIRLHQKYTKQLFISNDVFMIMHVSYRLF 178
            N ++   +G +YIR+HQK    + +SN         Y +F
Sbjct: 1335 NVFNLLHAGVSYIRIHQKGYGVVGVSNKYGKRSKARYPIF 1374


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 48  PHALIIITQQSQGRLILDCTKSTLSNCL 131
           PH+L+ ++   +GRL+  C+ S+++  L
Sbjct: 734 PHSLLTLSIYRRGRLLQQCSPSSVTKYL 761


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 178 KEPV*NMHYHEYIIRNKQLLSVLLVQSNISRP*LC 74
           K P     Y  +I+R  +L    +V SN+SRP +C
Sbjct: 164 KAPFEKFEYANFILR--ELEHQQMVSSNVSRPIIC 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,981
Number of Sequences: 5004
Number of extensions: 44198
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)