Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS331A03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450...    28   5.2  
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729...    27   6.9  

>05_01_0522 -
           4506667-4507254,4507474-4507824,4507967-4508163,
           4508324-4508582,4508656-4508868,4508946-4509071,
           4509159-4509296,4509376-4509721,4509822-4510088,
           4510427-4510616,4510700-4510784,4510885-4511072,
           4511262-4511457,4512027-4512113
          Length = 1076

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 375 LSRKKYINLIMPVY*SRALHAYCVSVVIRIL-NKFL*VTNLLNY*NIHYV 521
           L R  YIN I+    S  L AYCV   I +L NKF+ +  + NY  + ++
Sbjct: 843 LERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFI-IPEISNYAGMFFI 891


>02_05_0226 + 26971851-26972034,26972734-26972834,26972876-26972978,
            26973335-26973477,26973525-26973605,26973929-26974015,
            26974097-26974239,26974746-26974896,26974973-26975095,
            26975362-26975445,26975531-26975718,26976726-26976900,
            26977008-26977129,26977231-26977310,26977532-26977590,
            26977921-26978075,26978680-26978858,26980050-26980162,
            26980243-26980413,26980552-26980680,26980756-26980856,
            26980942-26981059,26981739-26981818,26983230-26983302,
            26983865-26983950,26984025-26984076,26984221-26984352,
            26984560-26984628,26984912-26985004,26985806-26985901,
            26986710-26986808,26986894-26986986,26987459-26987608,
            26988391-26988549
          Length = 1323

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +2

Query: 8    RLGDRSLDSRTTKSSCPN--YYHSAESGTAYIRLHQ-KYTKQLFISNDVFMIMHVSYRLF 178
            R+ D   +S+  + S  N   Y S +    Y++L + +YT QL+I +D   ++    +L 
Sbjct: 912  RIYDNKFESQYYRISDSNKCVYSSGDVYPNYVKLSKGEYTLQLYIRHDNVQLLEKLKQLV 971

Query: 179  *FAAKKKQMVDY 214
             F  +K +  D+
Sbjct: 972  LFIERKLEKKDF 983


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,658,046
Number of Sequences: 37544
Number of extensions: 239036
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)