Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330H10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    63   3e-11
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    31   0.10 
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    27   2.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.2  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    27   2.2  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    26   3.0  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    26   3.9  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    26   3.9  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.0  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   9.0  

>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
 Frame = -2

Query: 451 TDINFRACIMSKKTAEYNKVIF---DSVRMDLASSFAXXXXXXXXXXXP-----YVVTDS 296
           +DI+  AC  SK TA  N+ ++   + + + + +SF                  YV T+ 
Sbjct: 79  SDISNSACRASKITALNNRELYKDDNGLFITVQTSFLDGIRLGNGVDILIFNPPYVPTEF 138

Query: 295 EECGGD--DITASWAGGVKGREVTDRLLEMIPKKLAKDGTFYLLLIEENIPDEVINIMSN 122
           EE   +   I ++WAGG  G +VT  LL  +   L++DG FY++ +  N    +  I+  
Sbjct: 139 EEIPSEAATIASAWAGGTDGMDVTSTLLNQLKDILSQDGVFYMVAVARNKLHSICEILQK 198

Query: 121 HGFRYKTVVRRKVRNEQQIVLKFYRI 44
            GF     ++RK   E   +L+ YRI
Sbjct: 199 DGFIVNETLKRKAGRETLSILRIYRI 224


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 256  GGVKGREVTDRLLEMIPKKLAKDGTFYLLLIEENIPDEVINIMSNH 119
            GG KG+++ D  + M  +KL +DGT  ++ + E I  +  +    H
Sbjct: 1741 GGSKGKKIRDNYMAMAYEKLMEDGTSKVVPVFETITKDSTSFSFTH 1786


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 80  PHFPSYHSFISKSMIRHNIDYLIWNVLFNQQKVEC 184
           P+F SYHS + K   +  + +L  N    ++ ++C
Sbjct: 75  PNFESYHSKVGKKSCKRFMRWLKANAFAEERDIDC 109


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 186  PSLANFFGIISNNLSVTSLPLTPPAQLAVIS 278
            P+L  FF I++N +SVT L L    +L +++
Sbjct: 914  PTLGTFFQILTNIISVTILSLATGWKLGLVT 944


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 286  GGDDITASWAGGVKGREVTDRLLEMIPKKLAK 191
            G +DI++SW G    R   D +L  +  K +K
Sbjct: 1530 GSEDISSSWLGRTVSRPRLDTVLSSLGSKFSK 1561


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 186 PSLANFFGIISNNLSVTSLPLTPPAQLAVISSPPHSSESVTTYGGLNIMISNILSANELA 365
           PSL     +  ++LS +  P+  P+   + SSPP +S   T+    N++ ++ L ++   
Sbjct: 433 PSLVLGTSVNPHSLSPSQPPVVVPSNTTISSSPPLTSPVKTSANIPNLLPTSELDSSNAP 492

Query: 366 RS 371
            S
Sbjct: 493 HS 494


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 210 IISNNLSVTSLPLTPPAQLAVISSPPHSSESVTTYGGL 323
           ++ NN    +L LTP   L+V+   P +S  VTT   L
Sbjct: 127 VLMNNDEKNTLSLTPSIFLSVMKPCPKTSVLVTTVAAL 164


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 292 ECGGDDITASWAGGVKGREVTDRLLEMIPKKLAKDGTFYL 173
           EC         AGG+   +  DR+L+++PK L    + +L
Sbjct: 294 ECFPMAFLVEQAGGIAVNDKGDRILDLVPKTLHGKSSIWL 333


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -2

Query: 289 CGGDDITASWAGGVKGREVTDRLLEMIPKKLAKDGTFYLLLIEEN-----IPDEVINIMS 125
           C G D++ +W  G    +V    +    + LA +   Y L  EEN     +P +V+N   
Sbjct: 237 CPGGDLS-NWGWGEDATDVESSKMVDCCRPLAIE--VYELEDEENSLKGWVPPQVVNYTG 293

Query: 124 NHGFR 110
           NHG +
Sbjct: 294 NHGLK 298


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 216 SNNLSVTSLPLTPPAQLAVISSPPHSSESVTTY 314
           S++ + T+LP T    + V +S P +S S T+Y
Sbjct: 74  SDDGASTALPTTSTESVVVTTSAPAASSSATSY 106


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 156 FSSISRR*NVPSLANFFGIISNNLSVTSLPLTPPAQLAVISSPPHSSESVTTYG 317
           +S +  R +VP+    F    NNL    L +   A +A  ++  H  E ++ YG
Sbjct: 240 YSHVQTRGSVPA----FWAEVNNLRYKPLMVANSASMAAAAAKKHFDEQISIYG 289


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 506 WCRSNCIWYGIPFNILY 456
           WC  NC    +PF +L+
Sbjct: 194 WCLQNCSLIHVPFELLF 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,165
Number of Sequences: 5004
Number of extensions: 35298
Number of successful extensions: 131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)