Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330H10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0506 + 34402494-34403102 87 8e-18
09_06_0350 + 22461592-22461935,22462788-22462867,22463171-224632... 31 0.56
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 31 0.74
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 29 2.3
01_01_0398 - 3035690-3036289 29 2.3
09_03_0055 + 11934465-11934467,11935117-11935173,11935258-11935566 28 5.2
12_02_0895 + 24094809-24094886,24097197-24097402,24097493-24097919 27 6.9
11_06_0132 - 20431122-20431477,20431739-20433758 27 6.9
06_01_0429 - 3056302-3056570,3056681-3056951,3057055-3057206,305... 27 6.9
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 6.9
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 27 6.9
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872 27 6.9
02_05_0546 + 29889861-29890182,29891057-29892798 27 9.1
>03_06_0506 + 34402494-34403102
Length = 202
Score = 87.0 bits (206), Expect = 8e-18
Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 7/165 (4%)
Frame = -2
Query: 520 VGSGSGVVVTAFGMAF----PSTFCISTDINFRACIMSKKTAEYNKVIFDSVRMDLASSF 353
+G GSG V+T+ + T ++TDIN A ++ T E + V D + D+ S
Sbjct: 3 IGCGSGYVITSLAIMLRQLGSGTQYLATDINQHAVETTQATLEAHGVHADVIATDIVSGL 62
Query: 352 AXXXXXXXXXXXP---YVVTDSEECGGDDITASWAGGVKGREVTDRLLEMIPKKLAKDGT 182
YV T EE + I +SWAGG+ GR+V DR+L + + L++ G
Sbjct: 63 EKRLHGLVDVVVVNPPYVPTPEEEIESNGIASSWAGGINGRQVIDRILPAVRELLSERGW 122
Query: 181 FYLLLIEENIPDEVINIMSNHGFRYKTVVRRKVRNEQQIVLKFYR 47
Y++ +E+N P ++ ++M+ G+ + +++R E VLKF++
Sbjct: 123 LYMIALEDNDPLDICHLMNEKGYASRVLLKRCTEEESLYVLKFWQ 167
>09_06_0350 +
22461592-22461935,22462788-22462867,22463171-22463273,
22463423-22463501,22464208-22464292,22464639-22464685,
22465217-22465375
Length = 298
Score = 31.1 bits (67), Expect = 0.56
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 210 IISNNLSVTSLPLTPPAQLAVISSPPHSSESVTTYGGLNIMISNILSANELARSILTES- 386
++ + TS ++ +SS H S+ YG ++NIL ANELAR E
Sbjct: 149 LLLETMKKTSRESNVEGRIVNVSSEGHRYNSIGAYG--QSKLANILHANELARRFKDEGV 206
Query: 387 NIT 395
NIT
Sbjct: 207 NIT 209
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 30.7 bits (66), Expect = 0.74
Identities = 14/65 (21%), Positives = 35/65 (53%)
Frame = +3
Query: 291 SSESVTTYGGLNIMISNILSANELARSILTESNITLLYSAVFFDIMHALKLISVLIQNVE 470
++ + + L + ++ + + LA+++ +E+ +T + + VFFDI K ++ +
Sbjct: 2 AARETSRHASLCLWLALVAATLSLAQAVESEAELTKVTTKVFFDITINGKPAGRIVMGLF 61
Query: 471 GNAIP 485
GN +P
Sbjct: 62 GNTVP 66
>02_05_1331 +
35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 243 PLTPPAQLAVISSPPHSSESVTTYGGLNIMISNILSANELAR 368
PL+ L++I+ + V T GGLN +S I AN L R
Sbjct: 158 PLSRSDSLSIINGMRYLKLGVKTEGGLNASVSFIAKANPLNR 199
>01_01_0398 - 3035690-3036289
Length = 199
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 310 VVTDSEECGGDDITASWAGGVKGREVTDRLLEM 212
V + ++ GGDD A W G+ E D L+E+
Sbjct: 145 VALEEDDDGGDDDMAPWMHGLSASEQIDGLMEL 177
>09_03_0055 + 11934465-11934467,11935117-11935173,11935258-11935566
Length = 122
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 243 PLTPP-AQLAVISSPPHSSESVTTYGGLNIMISNILSANELARSILTESNITLLYSAVFF 419
PL PP Q ++S PP +S + N++++++ E +RS++ IT + A F
Sbjct: 53 PLVPPHLQHTLLSFPPSQDDSSSLPPPQNVVLNHLYIEKENSRSVVA-LGITHRFRAKFV 111
Query: 420 DIM 428
++
Sbjct: 112 TVV 114
>12_02_0895 + 24094809-24094886,24097197-24097402,24097493-24097919
Length = 236
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 517 GSGSGVVVTAFGMAFPSTFCISTDINFRACIMSKKTAE 404
G GV TA + T C TD++ C + + TAE
Sbjct: 108 GVAPGVSTTADSIFSSLTSCFHTDVSIAPCKLQESTAE 145
>11_06_0132 - 20431122-20431477,20431739-20433758
Length = 791
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 360 LARSILTESNITLLYSAVFFDIMHALKLISVLIQNVEGNAIPNAVTTTP 506
L+R L+ +N+T L + ++ M AL +V ++ G PNA + P
Sbjct: 4 LSRLTLSSNNLTGLIPSSIWNNMSALMAFTVQQNSLSGTIPPNAFSNFP 52
>06_01_0429 -
3056302-3056570,3056681-3056951,3057055-3057206,
3057419-3057631,3057791-3057959
Length = 357
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 267 AVISSPPHSSESVTTYGGLNIMISNILSANELARSILTESNITLLYSAVFFDIMHALKL 443
A ++ PH+S + YG + S + NEL + L E L +++ + HA+ L
Sbjct: 201 AFLTKLPHTSNDMDGYGCMKTYNSAVTYYNELLNNSLAEVRKKLQDASIVYLDKHAVTL 259
>04_04_1574 -
34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +3
Query: 186 PSLANFFGIISNNLSVTSLPLTPPAQLAVISSPPHSSES 302
PSLANFFG LS TS ++ +SS P SS S
Sbjct: 457 PSLANFFGAPKRILS-TSKQKLGATRMVRLSSQPSSSVS 494
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 237 SLPLTPPAQLAVISSPPHSSESVTTYGGLNIMISNILSANELARSILTESNI 392
+LP P ++ A ++SPP SS S + G I ++ + + L S + + I
Sbjct: 85 NLPEAPDSKPAGVASPPPSSSSSSPRGSPEITLTMVKAVVVLGSSEIVKGTI 136
>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
Length = 91
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 213 ISNNLSVTSLPLTPPAQLAVISSPPHSSESVTTYGGLNIMISNILSANELARSILTES 386
I +N + SLP + A + SP H +S+ YG + ++S + LA SI T S
Sbjct: 6 IEDNDDLLSLPGSL-ANTRIGESPSHQRDSLLIYGSWKVNYEQLVSTHALA-SIQTRS 61
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 219 NNLSVTSLPLTPPAQLAV---ISSPPHSSESVTTYGGLN 326
NN SV ++P P+ L ++ PP+ + TYG LN
Sbjct: 76 NNPSVVTMPHMAPSHLKSDKGVNGPPNLVRTGATYGNLN 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,841,434
Number of Sequences: 37544
Number of extensions: 211558
Number of successful extensions: 665
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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