Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330H10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016662-8|AAB66061.2|  234|Caenorhabditis elegans Hypothetical ...    64   4e-11
Z93397-6|CAB07718.2|  550|Caenorhabditis elegans Hypothetical pr...    34   0.071
Z81146-2|CAB03526.1|  340|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF000264-4|AAC71125.3|  631|Caenorhabditis elegans Hypothetical ...    28   4.7  
AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical...    28   4.7  
Z93397-4|CAB07721.1|  363|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical...    27   6.2  
AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical...    27   6.2  
Z75547-14|CAA99901.2|  461|Caenorhabditis elegans Hypothetical p...    27   8.1  

>AF016662-8|AAB66061.2|  234|Caenorhabditis elegans Hypothetical
           protein C33C12.9 protein.
          Length = 234

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 5/161 (3%)
 Frame = -2

Query: 520 VGSGSGVVVTAFGMAFPSTFC-ISTDINFRACIMSKKTAEYNKVIFDSVRMDLASSFAXX 344
           +G GSGVV T    A       ++TD+N  A  ++ +TA+ N +  D VR DL +     
Sbjct: 63  IGCGSGVVSTFVNQALGGNVTSVATDLNPHALDVTLETAKLNDIKIDVVRTDLFAGLENL 122

Query: 343 XXXXXXXXXP--YVVTDSEECGGDDITASWAGGVKGREVTDRLLEMIPKKLAKDGTFYLL 170
                       YV TD E     ++T  +AGG  GR   DRLL  +P+ L+  G FYL+
Sbjct: 123 LGKVDVLLFNPPYVPTDEEPKSNIELT--YAGGRTGRSTLDRLLPRVPELLSPRGVFYLV 180

Query: 169 LIEENIPDEVINIMSNHGFRYKTVV--RRKVRNEQQIVLKF 53
            +  N   ++  ++  H  +    V   R+   E   +LKF
Sbjct: 181 ALHSN---DIPALLKEHSEQMTVSVSMERRCGIEHLYILKF 218


>Z93397-6|CAB07718.2|  550|Caenorhabditis elegans Hypothetical
           protein ZC482.4 protein.
          Length = 550

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +3

Query: 273 ISSPPHSSESVTTYGGLNIMISNILSANELARSILTESNITLLYSAVFFDIMHALKLISV 452
           +SSP H     T YGGL +  ++ +S   + R+++T   +  + +    D+     L ++
Sbjct: 189 VSSPEHYETCNTLYGGLQLNSTSNISNLPMLRNVITMKGLINIENTSIQDLSFFQSLTTI 248

Query: 453 LIQNVEGNAI 482
             +NVE   I
Sbjct: 249 KYRNVESVVI 258


>Z81146-2|CAB03526.1|  340|Caenorhabditis elegans Hypothetical
           protein K10D11.2 protein.
          Length = 340

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 481 MAFPSTFCISTDINFRACIMSKKTAEYNKVIFDSVRMDLAS 359
           + FP+T    +D+  RA +++     + K IFDSV + L S
Sbjct: 129 LPFPTTVSEYSDVTERATVLNATETTFTKSIFDSVGLSLLS 169


>Z93374-4|CAB07556.1|  834|Caenorhabditis elegans Hypothetical
           protein C06C6.6 protein.
          Length = 834

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 219 NNLSVTSLPLTPPAQLAVISSPPHSSESVTTYGGLNIMISNILSANELARSILTES 386
           + L    LP+TPPA+   +S     + SV     LN  +S  L AN     I+ +S
Sbjct: 754 SRLKANELPITPPARTPTVSPAKSPANSVYKSEKLNKDVSR-LKANAKPSPIVMKS 808


>AF000264-4|AAC71125.3|  631|Caenorhabditis elegans Hypothetical
           protein F43E2.3 protein.
          Length = 631

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 264 LAVISSPPHSSESVTTYGGLNIMISNILSANELARSILTESNITLLYS--AVFFDIMHAL 437
           LAV+      + ++ T GGL+++I  +LS +    S+     +T L +  + F  + H  
Sbjct: 397 LAVLCGVSKGALALLTQGGLDLVIDRLLSISSSICSVEAAGILTQLTNPQSAFIRLNHVE 456

Query: 438 KLISVLIQNVE 470
            +IS L+  ++
Sbjct: 457 PIISRLLDLID 467


>AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.4 protein.
          Length = 546

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 252 PPAQLAVISSPPHSSESV-TTYGGLNIMISNILSANE 359
           PP   A IS+P  S+ +V T+YG ++ M  N +S  E
Sbjct: 45  PPGSSATISAPGASAATVPTSYGYISNMFKNFVSKVE 81


>Z93397-4|CAB07721.1|  363|Caenorhabditis elegans Hypothetical
           protein ZC482.7 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +3

Query: 273 ISSPPHSSESVTTYGGLNIMISNILSANELARSILTESNITLLYSAVFFDIMHALKLISV 452
           IS+P       T YGGL I  ++ +S     R+I+T   +  + +    D+     L  +
Sbjct: 46  ISAPEQYETCNTLYGGLEITSTSDISNLRSLRNIITVEGLINIENTNLQDLSFFQSLKFI 105

Query: 453 LIQNVEGNAIPN 488
             QNV G+ + N
Sbjct: 106 EYQNV-GSTVLN 116


>Z82269-5|CAH60772.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 210 IISNNLSVTSLPLTPPAQLAVISSPPHSSES 302
           I+SNN+   +LP TP    A  SSP ++  S
Sbjct: 157 IVSNNVPSQTLPSTPKPYTATPSSPSYNKVS 187


>Z82269-4|CAB70200.2|  633|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13a protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 210 IISNNLSVTSLPLTPPAQLAVISSPPHSSES 302
           I+SNN+   +LP TP    A  SSP ++  S
Sbjct: 157 IVSNNVPSQTLPSTPKPYTATPSSPSYNKVS 187


>AL021487-15|CAH60766.1|  618|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13b protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 210 IISNNLSVTSLPLTPPAQLAVISSPPHSSES 302
           I+SNN+   +LP TP    A  SSP ++  S
Sbjct: 157 IVSNNVPSQTLPSTPKPYTATPSSPSYNKVS 187


>AL021487-14|CAA16360.3|  633|Caenorhabditis elegans Hypothetical
           protein Y45F10B.13a protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 210 IISNNLSVTSLPLTPPAQLAVISSPPHSSES 302
           I+SNN+   +LP TP    A  SSP ++  S
Sbjct: 157 IVSNNVPSQTLPSTPKPYTATPSSPSYNKVS 187


>Z75547-14|CAA99901.2|  461|Caenorhabditis elegans Hypothetical
           protein R11D1.7 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 4   LFSIYFSYIYFNILFYKILKLFVVRSSLSFL 96
           LF + F+ ++ NI++  +L L  V S LSFL
Sbjct: 74  LFEV-FATLFVNIIYLSMLHLSAVESGLSFL 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,418,784
Number of Sequences: 27780
Number of extensions: 196816
Number of successful extensions: 734
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)