Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330H08f
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   0.47 
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    24   4.4  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    24   4.4  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    24   5.8  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    24   5.8  

>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.5 bits (58), Expect = 0.47
 Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
 Frame = +3

Query: 102 FAAEPLKVKKL--ENIYYDTK 158
           F+ EPL+VKKL  EN Y+D+K
Sbjct: 63  FSKEPLEVKKLPVENEYFDSK 83


>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 104 KVAKISLKSNSPSIYFFNMSLFMH 33
           K    +LKS   S YFFN   F H
Sbjct: 18  KFGTFTLKSGRKSPYFFNSGNFTH 41


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +3

Query: 81  FKRYFCNFAAEPLKVK-KLENIYYDTKNIFS---YLNGVNLIEXQLKTSNY 221
           FKR   N  A     K +L+N+YYD    FS   Y+ GV L+   L   ++
Sbjct: 197 FKRLLNNREALSKDEKSELQNLYYDLLLCFSYSYYVPGVKLLLPMLYNGSF 247


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 145 YMFSNFFTFNGSAAKLQKYRLNQIARRYIFLICHCLCMTCWREKWAI 5
           +M    F F  S  K+  + L      +I L+ HCL +    +KWA+
Sbjct: 233 FMALGVFFFRRSLKKVSYFNL----ATFITLLHHCLLVLTPFQKWAL 275


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 159 NIFSYLNGVNLIEXQLKTSNY 221
           N+F +L G  L+E   K+SN+
Sbjct: 145 NLFGFLAGKELLEEDPKSSNF 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,242,203
Number of Sequences: 5004
Number of extensions: 21219
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)