Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330H08f
         (305 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304...    27   3.8  
05_06_0004 - 24799975-24800033,24800138-24800489,24800588-24801175     26   6.7  
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54...    26   6.7  
04_04_0815 - 28269918-28270022,28270164-28270226,28270342-282704...    25   8.9  

>09_04_0609 -
           18929600-18929646,18929753-18929924,18930304-18930498,
           18930691-18930801,18930885-18931097,18931643-18931720,
           18931894-18932001,18932175-18932316,18932413-18933761,
           18934492-18935121
          Length = 1014

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 99  NFAAEPLKVKKLENIYYDTKNIFSYLNGVNL 191
           N   E    +  ENIYYD+  +  Y++ VNL
Sbjct: 94  NLGTEANNSESKENIYYDSACVKYYMSKVNL 124


>05_06_0004 - 24799975-24800033,24800138-24800489,24800588-24801175
          Length = 332

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 130 FFTFNGSAAKLQKYRLNQIARRYIFLICHCLC 35
           +FTF   +    + RL + ARR  F++C   C
Sbjct: 251 YFTFKEQSLAALRRRLEEEARREDFVVCRRRC 282


>02_01_0076 +
           540182-540583,541266-541475,541557-542018,542112-542222,
           542309-542488,543083-543367,544581-544701,544802-544923
          Length = 630

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 84  KRYFCNFAAEPLKVKKLENIYYDTKNIFSYLNGVNLI 194
           K ++ N+ +EP K+KK  N Y +  N+F+ L G +++
Sbjct: 378 KTFYSNWNSEPSKIKK-NNGYLN--NLFALLAGSSIV 411


>04_04_0815 -
           28269918-28270022,28270164-28270226,28270342-28270460,
           28270586-28270684,28270761-28270953,28271024-28271117,
           28271339-28271394,28272372-28272431,28272877-28272989,
           28273286-28273343,28273429-28273521,28273659-28273904,
           28274990-28275371,28275523-28275595,28275692-28275795,
           28275872-28275963,28275996-28276106,28276225-28276309,
           28276385-28276518,28278264-28278302
          Length = 772

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 116 WLCCKVAKISLKSNSPSIYFFNMSLFMHDLLAREMGN 6
           W C K +KI++  +S  IY +++   ++      MGN
Sbjct: 257 WACAKGSKIAIGFDSGDIYLWSIPDILNAQNLSSMGN 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,199,130
Number of Sequences: 37544
Number of extensions: 106523
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)