Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330H08f
(305 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039036-5|AAB94164.2| 351|Caenorhabditis elegans Hypothetical ... 27 2.0
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 27 3.4
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 27 3.4
AC024214-16|ABA00187.1| 343|Caenorhabditis elegans Hypothetical... 27 3.4
U97404-2|AAB93309.1| 795|Caenorhabditis elegans Acid-sensing/am... 26 6.0
U40029-5|AAA81125.2| 457|Caenorhabditis elegans Hypothetical pr... 26 6.0
U40029-4|ABD94116.1| 471|Caenorhabditis elegans Hypothetical pr... 26 6.0
U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical pr... 25 7.9
AF039711-9|ABS19467.1| 281|Caenorhabditis elegans Temporarily a... 25 7.9
AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp ass... 25 7.9
>AF039036-5|AAB94164.2| 351|Caenorhabditis elegans Hypothetical
protein E03D2.4 protein.
Length = 351
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 94 KYRLNQIARRYIFLICHCLCMTCWREKWA 8
K+RL + R+ +F + CL + W WA
Sbjct: 141 KFRLGFLFRKKVFRVVFCLMVLYWIYSWA 169
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 97 QKYRLNQIARRYIFLICHC 41
+++RLN + + Y +ICHC
Sbjct: 1769 RRFRLNTVVKWYDAIICHC 1787
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 97 QKYRLNQIARRYIFLICHC 41
+++RLN + + Y +ICHC
Sbjct: 1769 RRFRLNTVVKWYDAIICHC 1787
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 97 QKYRLNQIARRYIFLICHC 41
+++RLN + + Y +ICHC
Sbjct: 1769 RRFRLNTVVKWYDAIICHC 1787
>AC024214-16|ABA00187.1| 343|Caenorhabditis elegans Hypothetical
protein Y77E11A.16 protein.
Length = 343
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 81 FKRYFCNFAAEPLKVKKLENIYYDTKNIFS 170
F+R FC + P+ K L +Y + + +S
Sbjct: 309 FRRLFCRWMVRPIPTKSLTTVYGERETRYS 338
>U97404-2|AAB93309.1| 795|Caenorhabditis elegans
Acid-sensing/amiloride-sensitiveion channel family
protein 1 protein.
Length = 795
Score = 25.8 bits (54), Expect = 6.0
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = -2
Query: 70 RRYIFLICHCLCMTCW 23
RRY++L+C C++C+
Sbjct: 56 RRYMWLLCFLFCLSCF 71
>U40029-5|AAA81125.2| 457|Caenorhabditis elegans Hypothetical
protein F10G7.5a protein.
Length = 457
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 109 AAKLQKYRLNQIARRYIFLICHCLCMT 29
A + + L++I Y+F++C C +T
Sbjct: 395 AGLISTHALSEIGFEYLFIVCGCFMLT 421
>U40029-4|ABD94116.1| 471|Caenorhabditis elegans Hypothetical
protein F10G7.5b protein.
Length = 471
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 109 AAKLQKYRLNQIARRYIFLICHCLCMT 29
A + + L++I Y+F++C C +T
Sbjct: 409 AGLISTHALSEIGFEYLFIVCGCFMLT 435
>U28971-4|AAK68668.1| 628|Caenorhabditis elegans Hypothetical
protein B0244.10 protein.
Length = 628
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 116 WLCCKVAKISLKSNSPSIYFFNMSLFMHDLLAREMGNM 3
WL +A + L + ++ F +SL H +++MGN+
Sbjct: 485 WLLFCIACLILMGCTGTLLFVTVSLHWHSYKSKKMGNV 522
>AF039711-9|ABS19467.1| 281|Caenorhabditis elegans Temporarily
assigned gene nameprotein 296 protein.
Length = 281
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 48 HIKKIYRRAI*FKRYFCNF 104
H+ K+YR F YFC+F
Sbjct: 23 HLMKVYRLLSLFSLYFCDF 41
>AC024791-14|AAF60658.1| 767|Caenorhabditis elegans P300/cbp
associated factor homologprotein 1 protein.
Length = 767
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -2
Query: 142 MFSNFFTFNGSAAKLQK--YRLNQIARRYI 59
+F N + FNG+ A K Y+LN++A + +
Sbjct: 718 LFQNCYVFNGAEAVYYKYGYKLNELALKLL 747
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,710,841
Number of Sequences: 27780
Number of extensions: 111896
Number of successful extensions: 231
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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