Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330H06f
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   2.4  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   3.2  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   4.3  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    23   9.8  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    23   9.8  

>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 258 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 151
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 47  HTRIGLIYLNFLRIISRLLRQCV*RLDLYN 136
           H RI  I L F+R+ S++ R CV  +++Y+
Sbjct: 327 HARIKNIEL-FIRLYSQMYRHCVPIIEIYD 355


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 71  LNFLRIISRLLRQCV*RLDLYN 136
           LN+L I +++LR C   +D+YN
Sbjct: 469 LNYLYIRAQILRDCDIIIDIYN 490


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 10  RCAVHYLVQFKVTYANRTYLFEFPANYK 93
           +C V+ L+   + +    Y+F FP   K
Sbjct: 361 KCRVNSLISLVIKFGFGKYMFSFPITIK 388


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 216 NSPHLNFSYNHRFFDDIQKNM 154
           +SP+++F+Y+   F D QK +
Sbjct: 95  SSPNMDFTYSINSFGDYQKQL 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,021,776
Number of Sequences: 5004
Number of extensions: 15407
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)