Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330H06f
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011...    29   1.3  
02_01_0584 - 4326072-4326094,4326306-4326885                           26   8.9  

>02_05_0448 -
           29100674-29100716,29100821-29100902,29101010-29101130,
           29101481-29101546,29101628-29101735,29102083-29102148,
           29102605-29102633,29102773-29102902
          Length = 214

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 306 PLIPDGDGADVXLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDIQKN 157
           P+I  G+  D  +  C          D KE  PH       RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177


>02_01_0584 - 4326072-4326094,4326306-4326885
          Length = 200

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 309 EPLIPDGDGADVXLCSCGRS*GSNESEDSKENSP 208
           EP  PD   A    CSCG + GS+ S  ++  +P
Sbjct: 142 EPAAPDVAAA--VCCSCGAASGSSSSSSTEVKTP 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,462,804
Number of Sequences: 37544
Number of extensions: 94420
Number of successful extensions: 161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)