Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330H06f
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   2.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   4.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   4.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   5.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   5.4  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               20   7.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 52  ANRTYLFEFPANYKSPSTPVCVKA 123
           A RTYLF+   N      P  V A
Sbjct: 545 AGRTYLFDLDYNESEEQCPYTVDA 568


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 88  YKSPSTPVCVKA*LIQL 138
           Y SP++ VC+ A LI L
Sbjct: 621 YISPASQVCIAAALIAL 637


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 88  YKSPSTPVCVKA*LIQL 138
           Y SP++ VC+ A LI L
Sbjct: 711 YISPASQVCIAAALIAL 727


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 264 SCGRS*GSNESEDSKENSPHLNFSYNHRFFDD 169
           S GRS    E E SKE     + +YN++ +++
Sbjct: 285 SKGRSRDRTERERSKETKIISSNNYNYKNYNN 316


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 264 SCGRS*GSNESEDSKENSPHLNFSYNHRFFDD 169
           S GRS    E E SKE     + +YN++ +++
Sbjct: 296 SKGRSRDRTERERSKETKIISSNNYNYKNYNN 327


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 79  PANYKSPSTPVCVK 120
           P N K+P T +C +
Sbjct: 27  PCNCKAPETALCAR 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,767
Number of Sequences: 438
Number of extensions: 937
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)