Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330H02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   1.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   3.0  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    25   5.2  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   9.0  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    25   9.0  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 256  MNHGIQPGQNIVLTMHANKLLTLNIISVFIQIYLILKNNLTCNIAENALNFFLH 95
            MN  + P   I+  +   + L   II VF+    +L+N+ T +  + A  + LH
Sbjct: 1563 MNKSVSPASEILSDLDNKQQLNDQIIIVFVSWVHLLRNSATNDETKAAFVYQLH 1616


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 205 NKLLTLNIISVFIQIYLILKNNLT 134
           NK LT+NI  +++ I+   KN+LT
Sbjct: 75  NKSLTINIEDIYLSIHPQAKNSLT 98


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 180 MILRVSSLFACIVNTIFCPG*IPWF 254
           M+L  +  F CIV TI+C G + WF
Sbjct: 31  MVLAYNHKFDCIVVTIYC-GCLFWF 54


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 82  CTTKSVKRSLMHSLQCCKLN 141
           CTT+ + R ++H++  C L+
Sbjct: 120 CTTRKIFRQIVHAIDYCHLH 139


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = -1

Query: 287 KRYKLIMFMWHEPRNSTRTKYCVNNARKQTAYS*YHLCIYTNLSYS 150
           K +  IM+  H P    R +Y V         S Y+ C+   + Y+
Sbjct: 182 KAFGWIMYQQHGPDLRMRRRYLVYKIFMSLIKSDYYFCLTATVQYA 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,891,019
Number of Sequences: 5004
Number of extensions: 35471
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)