Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330H02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    27   8.1  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    27   8.1  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    27   8.1  

>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 101 KEV*CILCNVAS*IILKNKINL-YKYRDDIKSKQFVCVHC*HNIL--SWLNS 247
           K++ C  CN     + + K +L Y YR+ I SK F C  C +N +  S LNS
Sbjct: 543 KQLNCQHCN----FVTEYKHHLEYHYRNHIGSKPFQCKKCAYNCVNKSMLNS 590


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 101 KEV*CILCNVAS*IILKNKINL-YKYRDDIKSKQFVCVHC*HNIL--SWLNS 247
           K++ C  CN     + + K +L Y YR+ I SK F C  C +N +  S LNS
Sbjct: 565 KQLNCQHCN----FVTEYKHHLEYHYRNHIGSKPFQCKKCAYNCVNKSMLNS 612


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 101 KEV*CILCNVAS*IILKNKINL-YKYRDDIKSKQFVCVHC*HNIL--SWLNS 247
           K++ C  CN     + + K +L Y YR+ I SK F C  C +N +  S LNS
Sbjct: 565 KQLNCQHCN----FVTEYKHHLEYHYRNHIGSKPFQCKKCAYNCVNKSMLNS 612


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,303,008
Number of Sequences: 27780
Number of extensions: 197190
Number of successful extensions: 422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)