Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330G12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    28   0.97 
SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr ...    27   1.7  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   5.2  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 296 LIFL*YL-D*FIDFIKEMRYASVLDNFRSYYNI 201
           L+FL  + D FID+ KE++  S+ DNF   Y +
Sbjct: 81  LVFLRKMADVFIDYFKELQEESIRDNFVLVYEL 113


>SPAC652.01 |||BC10 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 108

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 222 IIQNASVPHFFYKVYKLI*ISQKY*C 299
           ++ NA+ P+FFY ++ L  I++KY C
Sbjct: 12  LVANAA-PYFFYPIFMLSMIARKYPC 36


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 436 INEQTIRNVVQIVDELVSVFSAFGYKV 516
           I+E+TI   +    EL+S+FS FGY+V
Sbjct: 253 ISERTIYGCMDD-SELLSLFSGFGYEV 278


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 349 VDKFYSILKK-LFNALRFLSSTNFAASCSPINEQTIRNVVQIVDEL 483
           +D F +I +K L N  +    TNF  +      QTI+N++ ++ E+
Sbjct: 281 LDSFSTISEKELLNYSKKQELTNFIENSIRKKIQTIKNLIPVLQEM 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,512
Number of Sequences: 5004
Number of extensions: 38295
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)