Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330G12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1037 - 10536547-10536585,10536814-10537102,10537202-105373...    28   4.0  
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846...    27   6.9  
06_03_0588 + 22567820-22570802,22570917-22571269                       27   6.9  
02_02_0061 + 6468190-6471046,6471318-6471736                           27   6.9  
02_02_0032 - 6227556-6227926,6228322-6231085                           27   6.9  
01_03_0282 - 14580875-14580891,14582126-14585855                       27   6.9  
10_07_0014 + 11800251-11800643,11800721-11801288,11801694-118017...    27   9.1  
02_02_0034 - 6246183-6246553,6246672-6249699                           27   9.1  

>08_01_1037 -
           10536547-10536585,10536814-10537102,10537202-10537327,
           10537336-10538291,10538379-10538825,10538904-10539632
          Length = 861

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 503 NALNTDTSSSTIWTTLRMVCSFMGEHEAAKLVDDKNL 393
           +A+   TS   IW+  R +C  +G  + + L DD  L
Sbjct: 38  DAVGLSTSPRKIWSRFRSICGVIGRQKFSILQDDIKL 74


>09_04_0676 -
           19383757-19383890,19384308-19384415,19384493-19384679,
           19384937-19385143
          Length = 211

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 52  YKNEYPFHKNIQFSS*ALNYSFNDNHWSNAVFSYFF 159
           + N+ P+H+ + F     ++S+ D H  +  FS  F
Sbjct: 103 FTNKSPYHETVDFDVLVSHFSYYDQHAKDEHFSALF 138


>06_03_0588 + 22567820-22570802,22570917-22571269
          Length = 1111

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 376 KLFNALRFLSSTNFAASCSPINEQTIRNVVQIVDELVSVFS 498
           K+FN   + +  +FAA C  +     RN+V+++    SV S
Sbjct: 837 KIFNLSTYGAHRSFAAECEALKNVRHRNLVKVITVCSSVDS 877


>02_02_0061 + 6468190-6471046,6471318-6471736
          Length = 1091

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 352 DKFYSILKKLFNALRFLSSTNFAASCSPINEQTIRNVVQIVDELVSV-FSAFGYKVL 519
           D+  ++  K+FN  +  SS +FAA C  +     RN+V+++    S+ F    +K +
Sbjct: 791 DQQVAVAVKVFNLKQRGSSKSFAAECETLRCVRHRNLVKVLTVCSSIDFQGRDFKAI 847


>02_02_0032 - 6227556-6227926,6228322-6231085
          Length = 1044

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 376 KLFNALRFLSSTNFAASCSPINEQTIRNVVQIVDELVSVFSAFGY 510
           K+FN  ++ + T+F A C  +     RN+V+I+  L S     GY
Sbjct: 852 KIFNLNKYGAPTSFNAECEALRYIRHRNLVKII-TLCSTVDPNGY 895


>01_03_0282 - 14580875-14580891,14582126-14585855
          Length = 1248

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 451 IRNVVQIVDELVSVFSAFGYK 513
           +R +VQI++ LV+  +AFG+K
Sbjct: 129 LRRIVQIIEVLVAEMNAFGFK 149


>10_07_0014 +
           11800251-11800643,11800721-11801288,11801694-11801729,
           11802908-11802911,11804142-11805108
          Length = 655

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 202 YIGCRGIFSETMISGKNMKTLHWTS 128
           YIGC G+ S  +++ KN    +W S
Sbjct: 601 YIGCWGLMSFNLVAWKNSGYAYWKS 625


>02_02_0034 - 6246183-6246553,6246672-6249699
          Length = 1132

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 376 KLFNALRFLSSTNFAASCSPINEQTIRNVVQIVDELVSVFSAFGY 510
           K+FN  ++ + T+F A C  +     RN+V+I+  L S     GY
Sbjct: 852 KVFNLNKYGAPTSFNAECEALRYIRHRNLVKII-TLCSTVDPNGY 895


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,031,899
Number of Sequences: 37544
Number of extensions: 189517
Number of successful extensions: 409
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)