Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330G10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   3.9  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   3.9  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   5.2  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   6.8  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   6.8  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    25   9.0  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   9.0  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 236 CRSISLITLFGYYGYIFFTTDSSICTNLLE 325
           CR+ SL+   G  GYIF     ++  N +E
Sbjct: 500 CRTSSLVEELGQVGYIFSDKTGTLTRNQME 529


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -2

Query: 475 NLSSNKERISIYY--EESDSFNENSNRLVQLLLGDNRHIRVGSSKTSRK 335
           NL  NKE  SI    E      EN+ R++Q L        VGSS+   +
Sbjct: 156 NLLENKENQSILVTGESGAGKTENTKRIIQYLAAIASSTTVGSSQVEEQ 204


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 163 NIFFD*WLQYVRKTFIHISIR 225
           N+F+D WL YV  TF  + ++
Sbjct: 95  NLFYDGWLSYVFHTFSGVYLK 115


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 395  SVIAGRQSPYTSRKFQDLKER*GALINWC 309
            ++I GR SPYT +    +      LINWC
Sbjct: 1313 TLIHGR-SPYTWKSASQVSYNASLLINWC 1340


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 13  RIRHEVFILLLSKYEFICWVTLILLLH 93
           R  +EVF+  LS Y  +C V   L LH
Sbjct: 395 RALNEVFLGGLSSYAIVCLVVSFLQLH 421


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 454 RISIYYEESDSFNENSNRLVQLLLGDNRHIRVGSSKTSRKD 332
           ++S YY+ +D+ N N N+L   L+  + H ++ S K +  D
Sbjct: 488 KVSSYYDNNDTNNPNLNKLQDELI--SLHSQLKSWKNTLYD 526


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 152 GPSSTYFLINGSNMYAKLSYTSPSADRHCRSIS 250
           GP ST +L NGS++   L +   S DR  + +S
Sbjct: 268 GPFSTDYLENGSDLKRSLGHNQKS-DRVSKDVS 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,042
Number of Sequences: 5004
Number of extensions: 48491
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)