Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330G10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602...    29   3.0  
06_03_1239 + 28610231-28610323,28610402-28610486,28610581-286108...    28   4.0  
11_04_0459 - 17945840-17945971,17946042-17946351,17947379-179475...    28   5.2  
02_05_0083 + 25684816-25685383,25685474-25685499,25686325-256867...    28   5.2  
08_02_0887 - 22278359-22278544,22278632-22278724,22278824-222789...    27   9.1  

>09_04_0480 +
           17958726-17958926,17959294-17959382,17960176-17960242,
           17960329-17960444,17960978-17961044,17961158-17961206,
           17961630-17961715,17961825-17962078,17962158-17962213,
           17962683-17962768,17963047-17963139,17963790-17964219,
           17964338-17964861,17964962-17965190,17965271-17965566
          Length = 880

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 314 NLLEPPIFP*GLGTSDSYMAIVS 382
           N++ P +FP G GT DS++AI S
Sbjct: 408 NVISPSMFPSGKGTMDSHVAIGS 430


>06_03_1239 +
           28610231-28610323,28610402-28610486,28610581-28610870,
           28611018-28611137,28611450-28611608
          Length = 248

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = -3

Query: 351 PRPQGKIGGSNKLVQIDESVVK 286
           P   G  GGS  LVQIDESVVK
Sbjct: 163 PYLSGTGGGSLDLVQIDESVVK 184


>11_04_0459 -
           17945840-17945971,17946042-17946351,17947379-17947514,
           17948123-17948253,17948337-17948710,17949194-17949246,
           17949973-17950288
          Length = 483

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 16  IRHEVFILLLSKYEFICWVTLILLLHVLSMPRKP 117
           ++H   + +  K+E I  + L +L+HV S P+ P
Sbjct: 341 LKHSALLNVREKFENIIALNLFILVHVKSQPQVP 374


>02_05_0083 +
           25684816-25685383,25685474-25685499,25686325-25686718,
           25687726-25687814,25687924-25687980,25688341-25688408,
           25688511-25688617,25688698-25688768,25688844-25688912
          Length = 482

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -2

Query: 442 YYEES-DSFNENSNRLVQLLLGDNRH 368
           YYE++ D+F E + + V+ LLG+ +H
Sbjct: 356 YYEKAVDAFREGNQKEVEYLLGEGKH 381


>08_02_0887 -
           22278359-22278544,22278632-22278724,22278824-22278908,
           22278977-22279087,22279155-22279288
          Length = 202

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 206 SYTSPSADRHCRSISLITLF-GYYGYIFFTTDSSICTNLLEPPIFP 340
           +Y+S  + R C    + T+  GYY   F   +   C N  E P FP
Sbjct: 101 AYSSSISGRWCHKQPVGTILCGYYCCEFLRVNGKYCANYDELPKFP 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,490
Number of Sequences: 37544
Number of extensions: 278606
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)