Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS330G10f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457329-1|CAG33610.1| 216|Homo sapiens MRPL24 protein. 29 7.5
BC117370-1|AAI17371.1| 1065|Homo sapiens leucine-rich repeats an... 29 7.5
BC117368-1|AAI17369.1| 1065|Homo sapiens leucine-rich repeats an... 29 7.5
BC016700-1|AAH16700.1| 216|Homo sapiens mitochondrial ribosomal... 29 7.5
BC012440-1|AAH12440.1| 216|Homo sapiens mitochondrial ribosomal... 29 7.5
AL590666-11|CAI16345.1| 99|Homo sapiens mitochondrial ribosoma... 29 7.5
AL590666-10|CAI16343.1| 173|Homo sapiens mitochondrial ribosoma... 29 7.5
AL590666-9|CAI16344.1| 216|Homo sapiens mitochondrial ribosomal... 29 7.5
AL357055-1|CAH73254.1| 1065|Homo sapiens leucine-rich repeats an... 29 7.5
AK223066-1|BAD96786.1| 216|Homo sapiens mitochondrial ribosomal... 29 7.5
AK222500-1|BAD96220.1| 216|Homo sapiens mitochondrial ribosomal... 29 7.5
AK024570-1|BAB14929.1| 216|Homo sapiens protein ( Homo sapiens ... 29 7.5
AB018349-1|BAA34526.2| 1073|Homo sapiens KIAA0806 protein protein. 29 7.5
BC104964-1|AAI04965.1| 1453|Homo sapiens CD163 molecule-like 1 p... 29 9.9
BC104962-1|AAI04963.1| 1453|Homo sapiens scavenger receptor cyst... 29 9.9
AF264014-1|AAF91396.1| 1453|Homo sapiens scavenger receptor cyst... 29 9.9
>CR457329-1|CAG33610.1| 216|Homo sapiens MRPL24 protein.
Length = 216
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 459 RKELAYIMRN-LIVSMRTVTDWFSYCWETIAIYESEVPRPQGKI 331
RK +I R ++V + DW+ +C +T+ I E + QGK+
Sbjct: 33 RKNPPWIRRRPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKV 76
>BC117370-1|AAI17371.1| 1065|Homo sapiens leucine-rich repeats and
immunoglobulin-like domains 2 protein.
Length = 1065
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 20 GTRCLFC-CYRNTNLFVGSH*FYSFMFYPCQESQDNTLSNNL*VMGPSSTYFLINGSNMY 196
GTR + CY N N++ + + + + ++ D TLS +L V P TY L++
Sbjct: 897 GTRVICSDCYDNANIYSRTREYCPYTYIAEEDVLDQTLS-SLMVQMPKETY-LVHPPQDT 954
Query: 197 AKLSYTSPSADR 232
L PSA+R
Sbjct: 955 TALESLIPSANR 966
>BC117368-1|AAI17369.1| 1065|Homo sapiens leucine-rich repeats and
immunoglobulin-like domains 2 protein.
Length = 1065
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 20 GTRCLFC-CYRNTNLFVGSH*FYSFMFYPCQESQDNTLSNNL*VMGPSSTYFLINGSNMY 196
GTR + CY N N++ + + + + ++ D TLS +L V P TY L++
Sbjct: 897 GTRVICSDCYDNANIYSRTREYCPYTYIAEEDVLDQTLS-SLMVQMPKETY-LVHPPQDT 954
Query: 197 AKLSYTSPSADR 232
L PSA+R
Sbjct: 955 TALESLIPSANR 966
>BC016700-1|AAH16700.1| 216|Homo sapiens mitochondrial ribosomal
protein L24 protein.
Length = 216
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 459 RKELAYIMRN-LIVSMRTVTDWFSYCWETIAIYESEVPRPQGKI 331
RK +I R ++V + DW+ +C +T+ I E + QGK+
Sbjct: 33 RKNPPWIRRRPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKV 76
>BC012440-1|AAH12440.1| 216|Homo sapiens mitochondrial ribosomal
protein L24 protein.
Length = 216
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 459 RKELAYIMRN-LIVSMRTVTDWFSYCWETIAIYESEVPRPQGKI 331
RK +I R ++V + DW+ +C +T+ I E + QGK+
Sbjct: 33 RKNPPWIRRRPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKV 76
>AL590666-11|CAI16345.1| 99|Homo sapiens mitochondrial ribosomal
protein L24 protein.
Length = 99
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 459 RKELAYIMRN-LIVSMRTVTDWFSYCWETIAIYESEVPRPQGKI 331
RK +I R ++V + DW+ +C +T+ I E + QGK+
Sbjct: 33 RKNPPWIRRRPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKV 76
>AL590666-10|CAI16343.1| 173|Homo sapiens mitochondrial ribosomal
protein L24 protein.
Length = 173
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 459 RKELAYIMRN-LIVSMRTVTDWFSYCWETIAIYESEVPRPQGKI 331
RK +I R ++V + DW+ +C +T+ I E + QGK+
Sbjct: 33 RKNPPWIRRRPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKV 76
>AL590666-9|CAI16344.1| 216|Homo sapiens mitochondrial ribosomal
protein L24 protein.
Length = 216
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 459 RKELAYIMRN-LIVSMRTVTDWFSYCWETIAIYESEVPRPQGKI 331
RK +I R ++V + DW+ +C +T+ I E + QGK+
Sbjct: 33 RKNPPWIRRRPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKV 76
>AL357055-1|CAH73254.1| 1065|Homo sapiens leucine-rich repeats and
immunoglobulin-like domains 2 protein.
Length = 1065
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 20 GTRCLFC-CYRNTNLFVGSH*FYSFMFYPCQESQDNTLSNNL*VMGPSSTYFLINGSNMY 196
GTR + CY N N++ + + + + ++ D TLS +L V P TY L++
Sbjct: 897 GTRVICSDCYDNANIYSRTREYCPYTYIAEEDVLDQTLS-SLMVQMPKETY-LVHPPQDT 954
Query: 197 AKLSYTSPSADR 232
L PSA+R
Sbjct: 955 TALESLIPSANR 966
>AK223066-1|BAD96786.1| 216|Homo sapiens mitochondrial ribosomal
protein L24 variant protein.
Length = 216
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 459 RKELAYIMRN-LIVSMRTVTDWFSYCWETIAIYESEVPRPQGKI 331
RK +I R ++V + DW+ +C +T+ I E + QGK+
Sbjct: 33 RKNPPWIRRRPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKV 76
>AK222500-1|BAD96220.1| 216|Homo sapiens mitochondrial ribosomal
protein L24 variant protein.
Length = 216
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 459 RKELAYIMRN-LIVSMRTVTDWFSYCWETIAIYESEVPRPQGKI 331
RK +I R ++V + DW+ +C +T+ I E + QGK+
Sbjct: 33 RKNPPWIRRRPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKV 76
>AK024570-1|BAB14929.1| 216|Homo sapiens protein ( Homo sapiens
cDNA: FLJ20917 fis, clone ADSE00750. ).
Length = 216
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 459 RKELAYIMRN-LIVSMRTVTDWFSYCWETIAIYESEVPRPQGKI 331
RK +I R ++V + DW+ +C +T+ I E + QGK+
Sbjct: 33 RKNPPWIRRRPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKV 76
>AB018349-1|BAA34526.2| 1073|Homo sapiens KIAA0806 protein protein.
Length = 1073
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 20 GTRCLFC-CYRNTNLFVGSH*FYSFMFYPCQESQDNTLSNNL*VMGPSSTYFLINGSNMY 196
GTR + CY N N++ + + + + ++ D TLS +L V P TY L++
Sbjct: 905 GTRVICSDCYDNANIYSRTREYCPYTYIAEEDVLDQTLS-SLMVQMPKETY-LVHPPQDT 962
Query: 197 AKLSYTSPSADR 232
L PSA+R
Sbjct: 963 TALESLIPSANR 974
>BC104964-1|AAI04965.1| 1453|Homo sapiens CD163 molecule-like 1
protein.
Length = 1453
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 254 ITLFGYYGYIFFTTDSSICTNLLEPPIFP*GLGTSDSYMAIVSQ 385
+T+ G I T S ICT L P+FP SD Y++ V +
Sbjct: 981 MTVLGAPPCIHGNTVSVICTGSLTQPLFPCLANVSDPYLSAVPE 1024
>BC104962-1|AAI04963.1| 1453|Homo sapiens scavenger receptor
cysteine-rich type 1 protein M160, precursor protein.
Length = 1453
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 254 ITLFGYYGYIFFTTDSSICTNLLEPPIFP*GLGTSDSYMAIVSQ 385
+T+ G I T S ICT L P+FP SD Y++ V +
Sbjct: 981 MTVLGAPPCIHGNTVSVICTGSLTQPLFPCLANVSDPYLSAVPE 1024
>AF264014-1|AAF91396.1| 1453|Homo sapiens scavenger receptor
cysteine-rich type 1 protein M160 precursor protein.
Length = 1453
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 254 ITLFGYYGYIFFTTDSSICTNLLEPPIFP*GLGTSDSYMAIVSQ 385
+T+ G I T S ICT L P+FP SD Y++ V +
Sbjct: 981 MTVLGAPPCIHGNTVSVICTGSLTQPLFPCLANVSDPYLSAVPE 1024
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,657,199
Number of Sequences: 237096
Number of extensions: 1594521
Number of successful extensions: 2974
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2974
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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