Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330G10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-5|CAA97422.1|  380|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    28   4.7  

>Z73103-5|CAA97422.1|  380|Caenorhabditis elegans Hypothetical
           protein C08F8.6 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -3

Query: 516 REYYKIMYAFSKGQIYHQTRKE-LAYIMRNLIVSMRTVTDWFSYCWETIAIYESEVPRPQ 340
           REY  I+ A  KGQ + +   E + Y++R  +    T +  + Y WE   + +++  + +
Sbjct: 255 REYLDILEAIDKGQFFDEPNYERIYYLLREAM--KNTGSTEYPYDWEQSLMKKTKEEQEK 312

Query: 339 GKIGGSNKLVQIDESVVK 286
            K G    +V   E V+K
Sbjct: 313 KKKG----VVDQTEKVIK 326


>U39677-1|AAC47961.2|  457|Caenorhabditis elegans Hypothetical
           protein C16E9.2a protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 225 ADGDVYESFAYILEPLIKKYVDEGPITHKLLESVLSWLSWHG*NMKE*NQCDPTNKFV 52
           ++ D    +  +    I   +DEGP T+KL         WHG   K+  +C P N F+
Sbjct: 365 SEADTVNQYPEVEGSNIDDELDEGP-TNKLWSMRGFAQVWHGLREKKRAECTPLNAFL 421


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 352 NFRLVYGDCLPAITEPIC 405
           N+RLVYG C+P IT  IC
Sbjct: 262 NYRLVYGYCVP-ITSSIC 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,313,861
Number of Sequences: 27780
Number of extensions: 260641
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)