Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS330G10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   0.82 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 516 REYYK--IMYAFSKGQIYHQTRKELAYIMRNLIVSMRTVTDWF 394
           +E+Y+  +++ F KG+   Q  K+L  +  +  +  R   +WF
Sbjct: 5   KEHYRHILLFYFRKGKNASQAHKKLCAVYGDEALKERQCQNWF 47


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 236 CRSISLITLFGYYGYIFFTTDSSI 307
           C   S++ + GY  YI+FTT  +I
Sbjct: 535 CGLSSMLCIPGYMIYIWFTTSGTI 558


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 236 CRSISLITLFGYYGYIFFTTDSSI 307
           C   S++ + GY  YI+FTT  +I
Sbjct: 588 CGLSSMLCIPGYMIYIWFTTSGTI 611


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/47 (21%), Positives = 24/47 (51%)
 Frame = +2

Query: 50  NTNLFVGSH*FYSFMFYPCQESQDNTLSNNL*VMGPSSTYFLINGSN 190
           +T +++G +  ++ + Y   ++    L+++     P  T F ING +
Sbjct: 198 STLVYIGDNEGFALIIYNNSDNSFQRLTSSTFASDPRYTTFTINGES 244


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 210 THLHPQIVTAVLLV*LPSLATM 275
           TH  PQ++  + L  LP++  M
Sbjct: 327 THRMPQLIRKIFLKYLPTILMM 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,168
Number of Sequences: 438
Number of extensions: 3308
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)